Deep learning, reusable and problem-based architectures for detection of consolidation on chest X-ray images. (March 2020)

• Record Type: Journal Article
• Authors: Behzadi-khormouji, Hamed; Rostami, Habib; Salehi, Sana; Derakhshande-Rishehri, Touba; Masoumi, Marzieh; Salemi, Siavash; Keshavarz, Ahmad; Gholamrezanezhad, Ali; Assadi, Majid; Batouli, Ali
• Is Part Of: Computer methods and programs in biomedicine. Volume 185(2020)
• Publication Date: 2020-03
• Subjects: Deep Convolutional Neural Network -- Transfer learning -- Chest X-ray -- Histogram matching -- Histogram equalization -- Consolidation -- Pneumonia -- Medical imaging -- Pediatric pneumonia -- Consolidation; Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2019.105162
• Languages: English
• ISSNs: 0169-2607

Abstract

Highlights: ChestNet is proposed which is proportional to the size of the dataset for detecting consolidation in chest X-ray images. ChestNet has two times fewer max-pooling layers than the VGG16 and DenseNet121 to preserves the features of the images. An efficient pre-processing process is proposed to remove confounding variables and histogram difference between images. An extra validation with a totally different dataset is performed to indicate the generality of the proposed model. Abstract: Background and objective: In most patients presenting with respiratory symptoms, the findings of chest radiography play a key role in the diagnosis, management, and follow-up of the disease. Consolidation is a common term in radiology, which indicates focally increased lung density. When the alveolar structures become filled with pus, fluid, blood cells or protein subsequent to a pulmonary pathological process, it may result in different types of lung opacity in chest radiograph. This study aims at detecting consolidations in chest x-ray radiographs, with a certain precision, using artificial intelligence and especially Deep Convolutional Neural Networks to assist radiologist for better diagnosis. Methods: Medical image datasets usually are relatively small to be used for training a Deep Convolutional Neural Network (DCNN), so transfer learning technique with well-known DCNNs pre-trained with ImageNet dataset are used to improve the accuracy of the models. ImageNet feature space is different from medical images and in the other side, the well-known DCNNs are designed to achieve the best performance on ImageNet. Therefore, they cannot show their best performance on medical images. To overcome this problem, we designed a problem-based architecture which preserves the information of images for detecting consolidation in Pediatric Chest X-ray dataset. We proposed a three-step pre-processing approach to enhance generalization of the models. To demonstrate the correctness of numerical results, an occlusion test is applied to visualize outputs of the model and localize the detected appropriate area. A different dataset as an extra validation is used in order to investigate the generalization of the proposed model. Results: The best accuracy to detect consolidation is 94.67% obtained by our problem based architecture for the understudy dataset which outperforms the previous works and the other architectures. Conclusions: The designed models can be employed as computer aided diagnosis tools in real practice. We critically discussed the datasets and the previous works based on them and show that without some considerations the results of them may be misleading. We believe, the output of AI should be only interpreted as focal consolidation. The clinical significance of the finding can not be interpreted without integration of clinical data.