A compressed sensing framework for efficient dissection of neural circuits. (January 2019)

• Record Type: Journal Article
• Authors: Lee, Jeffrey; Yonar, Abdullah; Hallacy, Timothy; Shen, Ching-Han; Milloz, Josselin; Srinivasan, Jagan; Kocabas, Askin; Ramanathan, Sharad
• Is Part Of: Nature methods. Volume 16:Number 1(2019)
• Page Start: 126
• Page End: 133
• Publication Date: 2019-01
• Subjects: Life sciences -- Methodology -- Periodicals; Life sciences -- Research -- Periodicals; Biology -- Methodology -- Periodicals; Biology -- Research -- Periodicals; 570.72
• DOI: 10.1038/s41592-018-0233-6
• Languages: English
• ISSNs: 1548-7091

Abstract

Abstract A fundamental question in neuroscience is how neural networks generate behavior. The lack of genetic tools and unique promoters to functionally manipulate specific neuronal subtypes makes it challenging to determine the roles of individual subtypes in behavior. We describe a compressed sensing-based framework in combination with non-specific genetic tools to infer candidate neurons controlling behaviors with fewer measurements than previously thought possible. We tested this framework by inferring interneuron subtypes regulating the speed of locomotion of the nematodeCaenorhabditis elegans . We developed a real-time stabilization microscope for accurate long-term, high-magnification imaging and targeted perturbation of neural activity in freely moving animals to validate our inferences. We show that a circuit of three interconnected interneuron subtypes, RMG, AVB and SIA control different aspects of locomotion speed as the animal navigates its environment. Our work suggests that compressed sensing approaches can be used to identify key nodes in complex biological networks. A compressed sensing approach enables the identification of key neurons involved in a particular behavior with few measurements, using genetic tools with limited specificity. The approach is demonstrated in theC. elegans interneuron circuitry.