New developments on the Encyclopedia of DNA Elements (ENCODE) data portal. Issue Volume 48:Issue D1(2020) (12th November 2019)

• Record Type: Journal Article
• Authors: Luo, Yunhai; Hitz, Benjamin C; Gabdank, Idan; Hilton, Jason A; Kagda, Meenakshi S; Lam, Bonita; Myers, Zachary; Sud, Paul; Jou, Jennifer; Lin, Khine; Baymuradov, Ulugbek K; Graham, Keenan; Litton, Casey; Miyasato, Stuart R; Strattan, J Seth; Jolanki, Otto; Lee, Jin-Wook; Tanaka, Forrest Y; Adenekan, Philip; O'Neill, Emma; Cherry, J Michael
• Is Part Of: Nucleic acids research. Volume 48:Issue D1(2020)
• Page Start: D882
• Page End: D889
• Publication Date: 2019-11-12
• Subjects: Nucleic acids -- Periodicals; Molecular biology -- Periodicals; 572.805
• DOI: 10.1093/nar/gkz1062
• Languages: English
• ISSNs: 0305-1048

Abstract

Abstract: The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/ ), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/ ) and more comprehensive tutorials and documentation.