LncTarD: a manually-curated database of experimentally-supported functional lncRNA–target regulations in human diseases. Issue Volume 48:Issue D1(2020) (12th November 2019)

• Record Type: Journal Article
• Authors: Zhao, Hongying; Shi, Jian; Zhang, Yunpeng; Xie, Aimin; Yu, Lei; Zhang, Caiyu; Lei, Junjie; Xu, Haotian; Leng, Zhijun; Li, Tengyue; Huang, Waidong; Lin, Shihua; Wang, Li; Xiao, Yun; Li, Xia
• Is Part Of: Nucleic acids research. Volume 48:Issue D1(2020)
• Page Start: D118
• Page End: D126
• Publication Date: 2019-11-12
• Subjects: Nucleic acids -- Periodicals; Molecular biology -- Periodicals; 572.805
• DOI: 10.1093/nar/gkz985
• Languages: English
• ISSNs: 0305-1048

Abstract

Abstract: Long non-coding RNAs (lncRNAs) are associated with human diseases. Although lncRNA–disease associations have received significant attention, no online repository is available to collect lncRNA-mediated regulatory mechanisms, key downstream targets, and important biological functions driven by disease-related lncRNAs in human diseases. We thus developed LncTarD (http://biocc.hrbmu.edu.cn/LncTarD/ or http://bio-bigdata.hrbmu.edu.cn/LncTarD ), a manually-curated database that provides a comprehensive resource of key lncRNA–target regulations, lncRNA-influenced functions, and lncRNA-mediated regulatory mechanisms in human diseases. LncTarD offers (i) 2822 key lncRNA–target regulations involving 475 lncRNAs and 1039 targets associated with 177 human diseases; (ii) 1613 experimentally-supported functional regulations and 1209 expression associations in human diseases; (iii) important biological functions driven by disease-related lncRNAs in human diseases; (iv) lncRNA–target regulations responsible for drug resistance or sensitivity in human diseases and (v) lncRNA microarray, lncRNA sequence data and transcriptome data of an 11 373 pan-cancer patient cohort from TCGA to help characterize the functional dynamics of these lncRNA–target regulations. LncTarD also provides a user-friendly interface to conveniently browse, search, and download data. LncTarD will be a useful resource platform for the further understanding of functions and molecular mechanisms of lncRNA deregulation in human disease, which will help to identify novel and sensitive biomarkers and therapeutic targets.