Catalytic mechanism and evolutionary characteristics of thioredoxin from Halobacterium salinarum NRC‐1. Issue 1 (2nd January 2020)

• Record Type: Journal Article
• Authors: Arai, Shigeki; Shibazaki, Chie; Shimizu, Rumi; Adachi, Motoyasu; Ishibashi, Matsujiro; Tokunaga, Hiroko; Tokunaga, Masao
• Is Part Of: Acta crystallographica. Volume 76:Issue 1(2020)
• Page Start: 73
• Page End: 84
• Publication Date: 2020-01-02
• Subjects: thioredoxin -- halophile -- molecular evolution -- Halobacterium salinarum NRC‐1; X-ray crystallography -- Periodicals; Crystallography -- Periodicals; Molecular biology -- Periodicals; Molecular structure -- Periodicals; Biomolecules -- Structure -- Periodicals; Cytology -- Periodicals; Biomolecules -- Structure; Crystallography; Cytology; Molecular biology; Molecular structure; X-ray crystallography; Periodicals; 548
• DOI: 10.1107/S2059798319015894
• Languages: English
• ISSNs: 2059-7983

Abstract

Abstract : The catalytic mechanism and the evolutionary characteristics of thioredoxin derived from the extreme halophile H. salinarum NRC‐1 were elucidated by X‐ray crystallographic analysis, circular‐dichroism analysis and enzymatic assays. Abstract : Thioredoxin (TRX) is an important antioxidant against oxidative stress. TRX from the extremely halophilic archaeon Halobacterium salinarum NRC‐1 (HsTRX‐A), which has the highest acidic residue content [(Asp + Glu)/(Arg + Lys + His) = 9.0] among known TRXs, was chosen to elucidate the catalytic mechanism and evolutionary characteristics associated with haloadaptation. X‐ray crystallographic analysis revealed that the main‐chain structure of HsTRX‐A is similar to those of homologous TRXs; for example, the root‐mean‐square deviations on C α atoms were <2.3 Å for extant archaeal TRXs and <1.5 Å for resurrected Precambrian TRXs. A unique water network was located near the active‐site residues (Cys45 and Cys48) in HsTRX‐A, which may enhance the proton transfer required for the reduction of substrates under a high‐salt environment. The high density of negative charges on the molecular surface (3.6 × 10 −3 e Å −2 ) should improve the solubility and haloadaptivity. Moreover, circular‐dichroism measurements and enzymatic assays using a mutant HsTRX‐A with deletion of the long flexible N‐terminal region (Ala2–Pro17) revealed that Ala2–Pro17 improves the structural stability and the enzymatic activity of HsTRX‐A under high‐salt environments (>2 M NaCl). The elongation of the N‐terminal region in HsTRX‐A accompanies the increased hydrophilicity and acidic residue content but does not affect the structure of the active site. These observations offer insights into molecular evolution for haloadaptation and potential applications in halophilic protein‐related biotechnology.