Multi-omics investigations within the Phylum Mollusca, Class Gastropoda: from ecological application to breakthrough phylogenomic studies. (14th October 2019)

• Record Type: Journal Article
• Authors: Klein, Anne H; Ballard, Kaylene R; Storey, Kenneth B; Motti, Cherie A; Zhao, Min; Cummins, Scott F
• Is Part Of: Briefings in functional genomics. Volume 18:Number 6(2019)
• Page Start: 377
• Page End: 394
• Publication Date: 2019-10-14
• Subjects: genomics -- proteomics -- gastropod -- health -- ecology -- biomineralization -- aquaculture; Genomics -- Methodology -- Periodicals; Genomics -- Technological innovations -- Periodicals; 572.86072
• DOI: 10.1093/bfgp/elz017
• Languages: English
• ISSNs: 2041-2649

Abstract

Abstract: Gastropods are the largest and most diverse class of mollusc and include species that are well studied within the areas of taxonomy, aquaculture, biomineralization, ecology, microbiome and health. Gastropod research has been expanding since the mid-2000s, largely due to large-scale data integration from next-generation sequencing and mass spectrometry in which transcripts, proteins and metabolites can be readily explored systematically. Correspondingly, the huge data added a great deal of complexity for data organization, visualization and interpretation. Here, we reviewed the recent advances involving gastropod omics ('gastropodomics') research from hundreds of publications and online genomics databases. By summarizing the current publicly available data, we present an insight for the design of useful data integrating tools and strategies for comparative omics studies in the future. Additionally, we discuss the future of omics applications in aquaculture, natural pharmaceutical biodiscovery and pest management, as well as to monitor the impact of environmental stressors.