A comprehensive profile of circulating RNAs in human serum. Issue 2 (1st February 2018)

• Record Type: Journal Article
• Authors: Umu, Sinan Uğur; Langseth, Hilde; Bucher-Johannessen, Cecilie; Fromm, Bastian; Keller, Andreas; Meese, Eckart; Lauritzen, Marianne; Leithaug, Magnus; Lyle, Robert; Rounge, Trine B.
• Is Part Of: RNA biology. Volume 15:Issue 2(2018)
• Page Start: 242
• Page End: 250
• Publication Date: 2018-02-01
• Subjects: Small RNA -- rna sequencing -- serum -- circulating RNA -- RNA fragments -- Bioinformatics -- cancer; RNA -- Periodicals; Molecular biology -- Periodicals; Molecular biology; RNA; Periodicals; 572.8805
• DOI: 10.1080/15476286.2017.1403003
• Languages: English
• ISSNs: 1547-6286

Abstract

ABSTRACT: Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA-seq) to investigate the profile of small non-coding RNA (sncRNA) in human serum. We analyzed 10 billion Illumina reads from 477 serum samples, included in the Norwegian population-based Janus Serum Bank (JSB). We found that the core serum RNA repertoire includes 258 micro RNAs (miRNA), 441 piwi-interacting RNAs (piRNA), 411 transfer RNAs (tRNA), 24 small nucleolar RNAs (snoRNA), 125 small nuclear RNAs (snRNA) and 123 miscellaneous RNAs (misc-RNA). We also investigated biological and technical variation in expression, and the results suggest that many RNA molecules identified in serum contain signs of biological variation. They are therefore unlikely to be random degradation by-products. In addition, the presence of specific fragments of tRNA, snoRNA, Vault RNA and Y_RNA indicates protection from degradation. Our results suggest that many circulating RNAs in serum can be potential biomarkers.