Development and evaluation of a direct TaqMan qPCR assay for the rapid detection of diverse carnivore amdoparvoviruses. (December 2019)

• Record Type: Journal Article
• Authors: Wu, Yan-Hong; Wei, Tao; Zhang, Xiu-Ting; Zhao, Yong-Qiang; Wang, Jian-Ke; Cong, Li; Xu, Bao-Zeng; Shao, Xi-Qun
• Is Part Of: Molecular and cellular probes. Volume 48(2019)
• Publication Date: 2019-12
• Subjects: Aleutian mink disease virus -- RFAV -- Carnivore amdoparvovirus -- TaqMan qPCR; Molecular probes -- Diagnostic use -- Periodicals; Pathology, Cellular -- Technique -- Periodicals; Cell Biology -- Periodicals; Molecular Biology -- Periodicals; Sondes moléculaires -- Utilisation diagnostique -- Périodiques; Cytopathologie -- Technique -- Périodiques; 572
• DOI: 10.1016/j.mcp.2019.101448
• Languages: English
• ISSNs: 0890-8508

Abstract

Abstract: Amdoparvoviruses infect carnivore species, including mink, raccoon dog, fox, skunk, and red panda. Amdoparvovirus infection is a major cause of morbidity and mortality in farmed minks. Here, we developed a direct TaqMan qPCR assay for detection and quantification of carnivore amdoparvoviruses by using three primers and one probe based on the conserved VP2 gene. The detection limit for Aleutian mink disease virus (AMDV) and Raccoon dog and arctic fox amdoparvovirus (RFAV) were 4.06 × 101 copies/μl and 2.93 × 101 copies/μl, respectively. Both intra- and inter-assay variability were less than 2%. Among 74 carnivore samples, the positive rates for amdoparvoviruses were 62.2% (46/74) by direct TaqMan qPCR, while only 40.5% (30/74) by SYBR Green I qPCR. This result suggests that the direct TaqMan qPCR was more sensitive than the SYBR Green I qPCR. Additionally, the direct TaqMan qPCR is a rapid and sensitive method for liquid samples at microliter level as the assay employed the direct alkaline lysis method to obtain viral DNA and, therefore, eliminated the cumbersome steps in extracting DNA. Overall, the direct TaqMan qPCR assay possessed high specificity, sensitivity, and reproducibility, indicating that it can be used as a powerful tool for detection and quantification of various carnivore amdoparvoviruses in epidemiological and pathogenesis studies. Highlights: A direct TaqMan qPCR assay was developed to detect and quantify carnivore amdoparvoviruses. The primer and probe binding sites of TaqMan qPCR are conserved in diverse carnivore amdoparvoviruses except for GFAV. Viral DNA was extracted from clinical samples by the direct alkaline lysis method.