HmtVar: a new resource for human mitochondrial variations and pathogenicity data. Issue Volume 47:Issue D1(2019) (29th October 2018)

• Record Type: Journal Article
• Authors: Preste, Roberto; Vitale, Ornella; Clima, Rosanna; Gasparre, Giuseppe; Attimonelli, Marcella
• Is Part Of: Nucleic acids research. Volume 47:Issue D1(2019)
• Page Start: D1202
• Page End: D1210
• Publication Date: 2018-10-29
• Subjects: Nucleic acids -- Periodicals; Molecular biology -- Periodicals; 572.805
• DOI: 10.1093/nar/gky1024
• Languages: English
• ISSNs: 0305-1048

Abstract

Abstract: Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of information on mtDNA variability may be exploited to gain insights into the relationship between mtDNA variants, phenotypes and diseases. To facilitate this process, we have developed the HmtVar resource, a variant-focused database that allows the exploration of a dataset of over 40 000 human mitochondrial variants. Mitochondrial variation data, initially gathered from the HmtDB platform, are integrated with in-house pathogenicity assessments based on various evaluation criteria and with a set of additional annotations from third-party resources. The result is a comprehensive collection of information of crucial importance for human mitochondrial variation studies and investigation of common and rare diseases in which the mitochondrion may be involved. HmtVar is accessible at https://www.hmtvar.uniba.it and data may be retrieved using either a web interface through the Query page or a state-of-the-art API for programmatic access.