Prediction of the allergic mechanism of haptens via a reaction-substructure-compound-target-pathway network system. (15th December 2019)

• Record Type: Journal Article
• Authors: Di, Peiwen; Wu, Zengrui; Yang, Hongbin; Li, Weihua; Tang, Yun; Liu, Guixia
• Is Part Of: Toxicology letters. Volume 317(2019)
• Page Start: 68
• Page End: 81
• Publication Date: 2019-12-15
• Subjects: Ac acylation reactions -- ACC accuracy -- ACD allergic contact dermatitis -- AOP adverse outcome pathway -- bSDTNBI balanced substructure-drug-target network-based inference -- CAS chemical abstracts service -- CD cluster of differentiation -- DC dendritic cell -- FP false positive -- HIF-1 hypoxia-inducible factor 1 -- KC keratinocyte -- MA Michael addition reactions -- MoSS Molecular Substructure Miner -- NF negative frequency -- NF-kappa B nuclear factor-kappa B -- OECD the Organization for Economic Cooperation and Development -- PF positive frequency -- PI3K-Akt phosphatidylinositol 3′-kinase-Akt -- SB Schiff base reactions -- SMILES simplified molecular input line entry system -- SN1 unimolecular nucleophilic substitution reactions -- SN2 bimolecular nucleophilic substitution reactions -- SNAr nucleophilic aromatic substitution reactions -- TCR T cell receptor -- TLR Toll-like receptor -- TNF tumor necrosis factor -- TP true positive; Skin sensitization -- Allergic contact dermatitis -- Adverse outcome pathway -- Systems toxicology -- Pathway enrichment -- Hazard identification; Toxicology -- Periodicals; 363.179
• DOI: 10.1016/j.toxlet.2019.09.019
• Languages: English
• ISSNs: 0378-4274

Abstract

Highlights: A network system was developed to predict reactions, targets and pathways of haptens. It is the first time to explore the relationships between reactions and skin targets. 12 key substructures were identified to determine the protein binding reactions. 33 skin targets and 12 pathways were acquired to understand the allergic mechanism. Abstract: Skin sensitization, frequently leading to allergic contact dermatitis (ACD), is authenticated to be a significant endpoint in the field of drug discovery and cosmetics. The initiation of ACD, also known as the skin sensitization mechanism, has been documented as an adverse outcome pathway (AOP), which can be studied experimentally and computationally. In this study, we collected 154 haptens and applied systems toxicology methods to develop a reaction-substructure-compound- target-pathway network system. For the collected haptens, their key substructures were identified and associated with their protein binding reactions. The targets of haptens, including the known targets collected from four databases and the potential targets predicted via our balanced substructure-drug-target network-based inference (bSDTNBI) method, were matched to skin proteins to obtain skin targets. The dermatitis-related pathways were enriched and were subject to literature verification. The network system we developed can be applied to predict the reactions, targets and pathways of new haptens, which contributed to evaluating chemical safety and optimizing chemical structures. The study of skin sensitization mechanism is helpful for understanding the skin immunity and resisting ACD.