A general approach to detect gene (G)‐environment (E) additive interaction leveraging G‐E independence in case‐control studies. (23rd August 2019)

• Record Type: Journal Article
• Authors: Tchetgen Tchetgen, Eric J.; Shi, Xu; Wong, Benedict H.W.; Sofer, Tamar
• Is Part Of: Statistics in medicine. Volume 38:Number 24(2019)
• Page Start: 4841
• Page End: 4853
• Publication Date: 2019-08-23
• Subjects: case‐control study -- gene‐environment additive interaction -- gene‐environment independence; Medical statistics -- Periodicals; Statistique médicale -- Périodiques; Statistiques médicales -- Périodiques; 610.727
• DOI: 10.1002/sim.8337
• Languages: English
• ISSNs: 0277-6715

Abstract

Abstract : It is increasingly of interest in statistical genetics to test for the presence of an additive interaction between genetic (G) and environmental (E) risk factors. In case‐control studies involving a rare disease, a statistical test of no additive G×E interaction typically entails a test of no relative excess risk due to interaction (RERI). It has been shown that a likelihood ratio test of a null RERI incorporating the G‐E independence assumption (RERI‐LRT) outperforms the standard approach. The RERI‐LRT relies on correct specification of a logistic model for the binary outcome, as a function of G, E, and auxiliary covariates. However, when at least one exposure is not categorical or auxiliary covariates are present, nonparametric estimation may not be feasible, while parametric logistic regression will a priori rule out the null hypothesis of no additive interaction in most practical situations, inflating type I error rate. In this paper, we present a general approach to test for G × E additive interaction exploiting G‐E independence. Unlike the RERI‐LRT, it allows the regression model for the binary outcome to remain unrestricted, and nonetheless still allows for covariate adjustment in order to ensure the G‐E independence assumption or to rule out residual confounding. The methods are illustrated through extensive simulation studies and an ovarian cancer study.