Blood vessel segmentation algorithms — Review of methods, datasets and evaluation metrics. (May 2018)

• Record Type: Journal Article
• Authors: Moccia, Sara; De Momi, Elena; El Hadji, Sara; Mattos, Leonardo S.
• Is Part Of: Computer methods and programs in biomedicine. Volume 158(2018)
• Page Start: 71
• Page End: 91
• Publication Date: 2018-05
• Subjects: Blood vessels -- Medical imaging -- Review -- Segmentation; Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2018.02.001
• Languages: English
• ISSNs: 0169-2607

Abstract

Highlights: An in-depth analysis of the most recent vessel segmentation approaches is given. A list of publicly available databases for algorithm testing is reported along with the most popular segmentation metrics for algorithm performance evaluation. The vessel segmentation techniques considered in this review are divided in three classes: machine learning, deformable models and vessel-tracking methods. Each segmentation approach is first analyzed in the general context of image segmentation and then in the specific context of vessel segmentation. For each analyzed algorithm, summary tables are presented, reporting imaging technique used, anatomical region and used performance measures. Abstract: Background: Blood vessel segmentation is a topic of high interest in medical image analysis since the analysis of vessels is crucial for diagnosis, treatment planning and execution, and evaluation of clinical outcomes in different fields, including laryngology, neurosurgery and ophthalmology. Automatic or semi-automatic vessel segmentation can support clinicians in performing these tasks. Different medical imaging techniques are currently used in clinical practice and an appropriate choice of the segmentation algorithm is mandatory to deal with the adopted imaging technique characteristics (e.g. resolution, noise and vessel contrast). Objective: This paper aims at reviewing the most recent and innovative blood vessel segmentation algorithms. Among the algorithms and approaches considered, we deeply investigated the most novel blood vessel segmentation including machine learning, deformable model, and tracking-based approaches. Methods: This paper analyzes more than 100 articles focused on blood vessel segmentation methods. For each analyzed approach, summary tables are presented reporting imaging technique used, anatomical region and performance measures employed. Benefits and disadvantages of each method are highlighted. Discussion: Despite the constant progress and efforts addressed in the field, several issues still need to be overcome. A relevant limitation consists in the segmentation of pathological vessels. Unfortunately, not consistent research effort has been addressed to this issue yet. Research is needed since some of the main assumptions made for healthy vessels (such as linearity and circular cross-section) do not hold in pathological tissues, which on the other hand require new vessel model formulations. Moreover, image intensity drops, noise and low contrast still represent an important obstacle for the achievement of a high-quality enhancement. This is particularly true for optical imaging, where the image quality is usually lower in terms of noise and contrast with respect to magnetic resonance and computer tomography angiography. Conclusion: No single segmentation approach is suitable for all the different anatomical region or imaging modalities, thus the primary goal of this review was to provide an up to date source of information about the state of the art of the vessel segmentation algorithms so that the most suitable methods can be chosen according to the specific task.