Whole-genome sequencing of esophageal adenocarcinoma in Chinese patients reveals distinct mutational signatures and genomic alterations. (December 2018)

• Record Type: Journal Article
• Authors: Dai, James; Wang, Xiaoyu; Buas, Matthew; Zhang, Chengjuan; Ma, Jie; Wei, Bing; Li, Yin; Zhao, Baosheng; Hyun, Teresa; Chen, Xueyan; Loeb, Keith; Odze, Robert; Yao, Lena; Sun, Xin; Self, Steve; Vaughan, Thomas; Guo, Yongjun
• Is Part Of: Communications biology. Volume 1:Number 1(2018)
• Page Start: 1
• Page End: 9
• Publication Date: 2018-12
• Subjects: Systems biology -- Periodicals; 570.113
• DOI: 10.1038/s42003-018-0182-8
• Languages: English
• ISSNs: 2399-3642

Abstract

Abstract While the incidence of esophageal adenocarcinoma (EAC) has risen drastically in Western countries over the last 40 years, a similar trend has not been observed for EAC in China. Here, we analyzed mutational spectrum, copy number alterations, and structural variants from whole-genome sequencing of 10 Chinese EAC tumor samples and their matched normal samples, and compared them to previously reported EAC tumor specimens from Western countries. The mutational burden in Chinese EAC was significantly lower than that found in EAC from Western countries. The hallmark A>C mutational signature observed at high frequency in EAC from Western countries, which has been linked to acid reflux, is completely absent in Chinese samples. Furthermore, none of the Chinese samples showed evidence of chromothripsis and genome doubling that are often found in EAC from Western countries. In summary, Chinese EAC tumor samples had distinct genomic profiles and signatures, suggesting that EAC in Chinese individuals may arise from a different etiological pathway. James Dai et al. report the first whole-genome sequencing study of esophageal adenocarcinoma (EAC) in Chinese patients. They find distinct genomic alterations and signatures compared to EAC in patients from Western countries.