A new crystal structure and small‐angle X‐ray scattering analysis of the homodimer of human SFPQ. Issue 6 (17th June 2019)

• Record Type: Journal Article
• Authors: Hewage, Thushara Welwelwela; Caria, Sofia; Lee, Mihwa
• Is Part Of: Acta crystallographica. Volume 75:Issue 6(2019:Jun.)
• Page Start: 439
• Page End: 449
• Publication Date: 2019-06-17
• Subjects: SFPQ -- DBHS protein family -- nuclear protein -- RNA‐recognition motif -- PSPC1 -- NONO -- dimerization -- crystal structure -- solution scattering -- Drosophila behavior human splicing; Crystallography -- Periodicals; Crystals -- Periodicals; 548
• DOI: 10.1107/S2053230X19006599
• Languages: English
• ISSNs: 2053-230X

Abstract

Abstract : The dimerization domain of splicing factor proline/glutamine‐rich (SFPQ), an essential RNA‐binding protein, has been crystallized in the C ‐centered orthorhombic space group C 2221 with one monomer in the asymmetric unit, and its structure has been determined and refined to 1.9 Å resolution. The crystal structure was analyzed and compared with the solution scattering data. Abstract : Splicing factor proline/glutamine‐rich (SFPQ) is an essential RNA‐binding protein that is implicated in many aspects of nuclear function. The structures of SFPQ and two paralogs, non‐POU domain‐containing octamer‐binding protein and paraspeckle component 1, from the Drosophila behavior human splicing protein family have previously been characterized. The unusual arrangement of the four domains, two RNA‐recognition motifs (RRMs), a conserved region termed the NonA/paraspeckle (NOPS) domain and a C‐terminal coiled coil, in the intertwined dimer provides a potentially unique RNA‐binding surface. However, the molecular details of how the four RRMs in the dimeric SFPQ interact with RNA remain to be characterized. Here, a new crystal structure of the dimerization domain of human SFPQ in the C ‐centered orthorhombic space group C 2221 with one monomer in the asymmetric unit is presented. Comparison of the new crystal structure with the previously reported structure of SFPQ and analysis of the solution small‐angle X‐scattering data revealed subtle domain movements in the dimerization domain of SFPQ, supporting the concept of multiple conformations of SFPQ in equilibrium in solution. The domain movement of RRM1, in particular, may reflect the complexity of the RNA substrates of SFPQ. Taken together, the crystal and solution structure analyses provide a molecular basis for further investigation into the plasticity of nucleic acid binding by SFPQ in the absence of the structure in complex with its cognate RNA‐binding partners.