A prototype cloud-based reproducible data analysis and visualization platform for outputs of agent-based models. (October 2017)

• Record Type: Journal Article
• Authors: Jin, Xiongbing; Robinson, Kirsten; Lee, Allen; Polhill, J. Gary; Pritchard, Calvin; Parker, Dawn C.
• Is Part Of: Environmental modelling & software. Volume 96(2017)
• Page Start: 172
• Page End: 180
• Publication Date: 2017-10
• Subjects: Reproducibility -- Agent-based models -- Big data; Environmental monitoring -- Computer programs -- Periodicals; Ecology -- Computer simulation -- Periodicals; Digital computer simulation -- Periodicals; Computer software -- Periodicals; Environmental Monitoring -- Periodicals; Computer Simulation -- Periodicals; Environnement -- Surveillance -- Logiciels -- Périodiques; Écologie -- Simulation, Méthodes de -- Périodiques; Simulation par ordinateur -- Périodiques; Logiciels -- Périodiques; Computer software; Digital computer simulation; Ecology -- Computer simulation; Environmental monitoring -- Computer programs; Periodicals; Electronic journals; 363.70015118
• DOI: 10.1016/j.envsoft.2017.06.010
• Languages: English
• ISSNs: 1364-8152

Abstract

Abstract: Agent-based models typically have stochastic elements and many potential parameter combinations. This requires that we conduct multiple model runs to sweep the parameter space, creating large quantities of computationally generated, hyper-dimensional, "big data". Understanding the models' implications requires structured exploration of these complex output data. In response to this need, the MIRACLE team has developed a prototype web application that enables researchers who archive their model output data and analysis methods to perform online output data exploration and reproducible, re-parameterizable data analysis. We plan to build on this prototype, integrating with broader reproducibility initiatives in scientific computation and big data, to facilitate improved communication within research groups, and increase access and transparency for external research community and the general public. This paper provides contextual background and a case study of the prototype MIRACLE data storage and analysis web tool. Highlights: Effectively sharing model output data and analysis is essential to reproducibility. A prototype ABM output data analysis, visualization and sharing platform is developed. Case study shows the utility of the platform in collaboration and communication. The platform has the potential to reduce the barriers to entry to ABM research.