Automated detection of sudden unexpected death in epilepsy risk factors in electronic medical records using natural language processing. (21st May 2019)

• Record Type: Journal Article
• Authors: Barbour, Kristen; Hesdorffer, Dale C.; Tian, Niu; Yozawitz, Elissa G.; McGoldrick, Patricia E.; Wolf, Steven; McDonough, Tiffani L.; Nelson, Aaron; Loddenkemper, Tobias; Basma, Natasha; Johnson, Stephen B.; Grinspan, Zachary M.
• Is Part Of: Epilepsia. Volume 60:issue 6(2019)
• Page Start: 1209
• Page End: 1220
• Publication Date: 2019-05-21
• Subjects: electronic health records -- generalized tonic–clonic seizures -- natural language processing -- patient education -- sudden unexpected death in epilepsy; Epilepsy -- Periodicals; 616.853
• DOI: 10.1111/epi.15966
• Languages: English
• ISSNs: 0013-9580

Abstract

Abstract: Objective: Sudden unexpected death in epilepsy (SUDEP) is an important cause of mortality in epilepsy. However, there is a gap in how often providers counsel patients about SUDEP. One potential solution is to electronically prompt clinicians to provide counseling via automated detection of risk factors in electronic medical records (EMRs). We evaluated (1) the feasibility and generalizability of using regular expressions to identify risk factors in EMRs and (2) barriers to generalizability. Methods: Data included physician notes for 3000 patients from one medical center (home) and 1000 from five additional centers (away). Through chart review, we identified three SUDEP risk factors: (1) generalized tonic–clonic seizures, (2) refractory epilepsy, and (3) epilepsy surgery candidacy. Regular expressions of risk factors were manually created with home training data, and performance was evaluated with home test and away test data. Performance was evaluated by sensitivity, positive predictive value, and F‐measure. Generalizability was defined as an absolute decrease in performance by <0.10 for away versus home test data. To evaluate underlying barriers to generalizability, we identified causes of errors seen more often in away data than home data. To demonstrate how small revisions can improve generalizability, we removed three "boilerplate" standard text phrases from away notes and repeated performance. Results: We observed high performance in home test data (F‐measure range = 0.86‐0.90), and low to high performance in away test data (F‐measure range = 0.53‐0.81). After removing three boilerplate phrases, away performance improved (F‐measure range = 0.79‐0.89) and generalizability was achieved for nearly all measures. The only significant barrier to generalizability was use of boilerplate phrases, causing 104 of 171 errors (61%) in away data. Significance: Regular expressions are a feasible and probably a generalizable method to identify variables related to SUDEP risk. Our methods may be implemented to create large patient cohorts for research and to generate electronic prompts for SUDEP counseling.