Excited-state solvation structure of transition metal complexes from molecular dynamics simulations and assessment of partial atomic charge methods. Issue 7 (5th February 2019)
- Record Type:
- Journal Article
- Title:
- Excited-state solvation structure of transition metal complexes from molecular dynamics simulations and assessment of partial atomic charge methods. Issue 7 (5th February 2019)
- Main Title:
- Excited-state solvation structure of transition metal complexes from molecular dynamics simulations and assessment of partial atomic charge methods
- Authors:
- Abedi, Mostafa
Levi, Gianluca
Zederkof, Diana B.
Henriksen, Niels E.
Pápai, Mátyás
Møller, Klaus B. - Abstract:
- Abstract : Excited-state solvation structure (radial distribution function) of transition metal complexes by classical and mixed quantum-classical (QM/MM) molecular dynamics simulations. Abstract : In this work, we investigate the excited-state solute and solvation structure of [Ru(bpy)3 ] 2+, [Fe(bpy)3 ] 2+, [Fe(bmip)2 ] 2+ and [Cu(phen)2 ] + (bpy = 2, 2′-bipyridine; bmip = 2, 6-bis(3-methyl-imidazole-1-ylidine)-pyridine; phen = 1, 10-phenanthroline) transition metal complexes (TMCs) in terms of solute–solvent radial distribution functions (RDFs) and evaluate the performance of some of the most popular partial atomic charge (PAC) methods for obtaining these RDFs by molecular dynamics (MD) simulations. To this end, we compare classical MD of a frozen solute in water and acetonitrile (ACN) with quantum mechanics/molecular mechanics Born–Oppenheimer molecular dynamics (QM/MM BOMD) simulations. The calculated RDFs show that the choice of a suitable PAC method is dependent on the coordination number of the metal, denticity of the ligands, and type of solvent. It is found that this selection is less sensitive for water than ACN. Furthermore, a careful choice of the PAC method should be considered for TMCs that exhibit a free direct coordination site, such as [Cu(phen)2 ] + . The results of this work show that fast classical MD simulations with ChelpG/RESP or CM5 PACs can produce RDFs close to those obtained by QM/MM MD and thus, provide reliable solvation structures of TMCs to beAbstract : Excited-state solvation structure (radial distribution function) of transition metal complexes by classical and mixed quantum-classical (QM/MM) molecular dynamics simulations. Abstract : In this work, we investigate the excited-state solute and solvation structure of [Ru(bpy)3 ] 2+, [Fe(bpy)3 ] 2+, [Fe(bmip)2 ] 2+ and [Cu(phen)2 ] + (bpy = 2, 2′-bipyridine; bmip = 2, 6-bis(3-methyl-imidazole-1-ylidine)-pyridine; phen = 1, 10-phenanthroline) transition metal complexes (TMCs) in terms of solute–solvent radial distribution functions (RDFs) and evaluate the performance of some of the most popular partial atomic charge (PAC) methods for obtaining these RDFs by molecular dynamics (MD) simulations. To this end, we compare classical MD of a frozen solute in water and acetonitrile (ACN) with quantum mechanics/molecular mechanics Born–Oppenheimer molecular dynamics (QM/MM BOMD) simulations. The calculated RDFs show that the choice of a suitable PAC method is dependent on the coordination number of the metal, denticity of the ligands, and type of solvent. It is found that this selection is less sensitive for water than ACN. Furthermore, a careful choice of the PAC method should be considered for TMCs that exhibit a free direct coordination site, such as [Cu(phen)2 ] + . The results of this work show that fast classical MD simulations with ChelpG/RESP or CM5 PACs can produce RDFs close to those obtained by QM/MM MD and thus, provide reliable solvation structures of TMCs to be used, e.g. in the analysis of scattering data. … (more)
- Is Part Of:
- Physical chemistry chemical physics. Volume 21:Issue 7(2019)
- Journal:
- Physical chemistry chemical physics
- Issue:
- Volume 21:Issue 7(2019)
- Issue Display:
- Volume 21, Issue 7 (2019)
- Year:
- 2019
- Volume:
- 21
- Issue:
- 7
- Issue Sort Value:
- 2019-0021-0007-0000
- Page Start:
- 4082
- Page End:
- 4095
- Publication Date:
- 2019-02-05
- Subjects:
- Chemistry, Physical and theoretical -- Periodicals
541.3 - Journal URLs:
- http://pubs.rsc.org/en/journals/journalissues/cp#!issueid=cp016040&type=current&issnprint=1463-9076 ↗
http://www.rsc.org/ ↗ - DOI:
- 10.1039/c8cp06567e ↗
- Languages:
- English
- ISSNs:
- 1463-9076
- Deposit Type:
- Legaldeposit
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library DSC - 6475.306000
British Library DSC - BLDSS-3PM
British Library STI - ELD Digital store - Ingest File:
- 10449.xml