FullSSR: Microsatellite Finder and Primer Designer. (6th June 2016)
- Record Type:
- Journal Article
- Title:
- FullSSR: Microsatellite Finder and Primer Designer. (6th June 2016)
- Main Title:
- FullSSR: Microsatellite Finder and Primer Designer
- Authors:
- Metz, Sebastián
Cabrera, Juan Manuel
Rueda, Eva
Giri, Federico
Amavet, Patricia - Other Names:
- Casadio Rita Academic Editor.
- Abstract:
- Abstract : Microsatellites are genomic sequences comprised of tandem repeats of short nucleotide motifs widely used as molecular markers in population genetics. FullSSR is a new bioinformatic tool for microsatellite (SSR) loci detection and primer design using genomic data from NGS assay. The software was tested with 2000 sequences of Oryza sativa shotgun sequencing project from the National Center of Biotechnology Information Trace Archive and with partial genome sequencing with ROCHE 454® from Caiman latirostris, Salvator merianae, Aegla platensis, and Zilchiopsis collastinensis . FullSSR performance was compared against other similar SSR search programs. The results of the use of this kind of approach depend on the parameters set by the user. In addition, results can be affected by the analyzed sequences because of differences among the genomes. FullSSR simplifies the detection of SSRs and primer design on a big data set. The command line interface of FullSSR was intended to be used as part of genomic analysis tools pipeline; however, it can be used as a stand-alone program because the results are easily interpreted for a nonexpert user.
- Is Part Of:
- Advances in bioinformatics. Volume 2016(2016)
- Journal:
- Advances in bioinformatics
- Issue:
- Volume 2016(2016)
- Issue Display:
- Volume 2016, Issue 2016 (2016)
- Year:
- 2016
- Volume:
- 2016
- Issue:
- 2016
- Issue Sort Value:
- 2016-2016-2016-0000
- Page Start:
- Page End:
- Publication Date:
- 2016-06-06
- Subjects:
- Bioinformatics -- Periodicals
Bioinformatics
Computational Biology -- Periodicals
Periodicals
570.285 - Journal URLs:
- http://bibpurl.oclc.org/web/52720 ↗
https://www.hindawi.com/journals/abi/ ↗
http://www.ncbi.nlm.nih.gov/pmc/journals/984/ ↗ - DOI:
- 10.1155/2016/6040124 ↗
- Languages:
- English
- ISSNs:
- 1687-8027
- Deposit Type:
- Legaldeposit
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library HMNTS - ELD Digital store
- Ingest File:
- 10258.xml