A template framework for environmental timeseries data acquisition. (July 2019)

• Record Type: Journal Article
• Authors: Samourkasidis, Argyrios; Papoutsoglou, Evangelia; Athanasiadis, Ioannis N.
• Is Part Of: Environmental modelling & software. Volume 117(2019)
• Page Start: 237
• Page End: 249
• Publication Date: 2019-07
• Subjects: Environmental timeseries -- Internet of things -- Syntactic interoperability -- Data acquisition -- Templates -- Big data; Environmental monitoring -- Computer programs -- Periodicals; Ecology -- Computer simulation -- Periodicals; Digital computer simulation -- Periodicals; Computer software -- Periodicals; Environmental Monitoring -- Periodicals; Computer Simulation -- Periodicals; Environnement -- Surveillance -- Logiciels -- Périodiques; Écologie -- Simulation, Méthodes de -- Périodiques; Simulation par ordinateur -- Périodiques; Logiciels -- Périodiques; Computer software; Digital computer simulation; Ecology -- Computer simulation; Environmental monitoring -- Computer programs; Periodicals; Electronic journals; 363.70015118
• DOI: 10.1016/j.envsoft.2018.10.009
• Languages: English
• ISSNs: 1364-8152

Abstract

Abstract: Environmental timeseries data variety is exploding in the Internet of Things era, making data reuse a very demanding task. Data acquisition and integration remains a laborious step of the environmental data lifecycle. Environmental data heterogeneity is a persistent issue, as data are becoming available through different protocols and stored under diverse, custom formats. In this work, we deal with syntactic heterogeneity in environmental timeseries data. Our approach is based on describing different dataset syntaxes using abstract representations, called templates. We designed and implemented EDAM (Environmental Data Acquisition Module), a template framework that facilitates timeseries data acquisition and integration. EDAM templates are written using programming language-agnostic semantics, and can be reused both for input and output, thus enabling data reuse via transformations across different formats. We demonstrate EDAM generality in seven case studies, which involve scraping online data, extracting observations from a relational database, or aggregating historical timeseries stored in local files. Case studies span different environmental sciences domains, including meteorology, agriculture, urban air quality and hydrology. We also demonstrate EDAM for data dissemination, as instructed by output templates. We identified several syntactic interoperability challenges though the case studies, that include managing with differences in formatting observables, temporal and spatial references, and metadata documentation, and addressed them with EDAM. EDAM implementation has been released under an open-source license.