A general method for combining different family-based rare-variant tests of association to improve power and robustness of a wide range of genetic architectures. Issue 7 (October 2016)

• Record Type: Journal Article
• Authors: Green, Alden; Cook, Kaitlyn; Grinde, Kelsey; Valcarcel, Alessandra; Tintle, Nathan
• Is Part Of: BMC proceedings. Volume 10:Issue 7(2016)
• Page Start: 165
• Page End: 170
• Publication Date: 2016-10
• Subjects: Medicine -- Congresses; Biology -- Congresses; 610.5
• DOI: 10.1186/s12919-016-0024-y
• Languages: English
• ISSNs: 1753-6561

Abstract

Abstract Current rare-variant, gene-based tests of association often suffer from a lack of statistical power to detect genotype–phenotype associations as a result of a lack of prior knowledge of genetic disease models combined with limited observations of extremely rare causal variants in population-based samples. The use of pedigree data, in which rare variants are often more highly concentrated than in population-based data, has been proposed as 1 possible method for enhancing power. Methods for combining multiple gene-based tests of association into a single summaryp value are a robust approach to different genetic architectures when little a priori knowledge is available about the underlying genetic disease model. To date, however, little consideration has been given to combining gene-based tests of association for the analysis of pedigree data. We propose a flexible framework for combining any number of family-based rare-variant tests of association into a single summary statistic and for assessing the significance of that statistic. We show that this approach maintains type I error and improves the robustness, to different genetic architectures, of the statistical power of family- and gene-based rare-variant tests through application to simulated phenotype data from Genetic Analysis Workshop 19.