A novel method to characterize silica bodies in grasses. Issue 1 (December 2016)

• Record Type: Journal Article
• Authors: Dabney, Clemon; Ostergaard, Jason; Watkins, Eric; Chen, Changbin
• Is Part Of: Plant methods. Volume 12:Issue 1(2016)
• Page Start: 1
• Page End: 10
• Publication Date: 2016-12
• Subjects: Silica body -- Fluorescence microscopy -- Dry ash-imaging -- Photoshop -- Koeleria macrantha -- Junegrass; Botany -- Methodology -- Periodicals; 572.2
• DOI: 10.1186/s13007-016-0108-8
• Languages: English
• ISSNs: 1746-4811

Abstract

Abstract Background The deposition of silicon into epidermal cells of grass species is thought to be an important mechanism that plants use as a defense against pests and environmental stresses. There are a number of techniques available to study the size, density and distribution pattern of silica bodies in grass leaves. However, none of those techniques can provide a high-throughput analysis, especially for a great number of samples. Results We developed a method utilizing the autofluorescence of silica bodies to investigate their size and distribution, along with the number of carbon inclusions within the silica bodies of perennial grass speciesKoeleria macrantha . Fluorescence images were analyzed by image software Adobe Photoshop CS5 or ImageJ that remarkably facilitated the quantification of silica bodies in the dry ash. We observed three types of silica bodies or silica body related mineral structures. Silica bodies were detected on both abaxial and adaxial epidermis ofK. macrantha leaves, although their sizes, density, and distribution patterns were different. No auto-fluorescence was detected from carbon inclusions. Conclusions The combination of fluorescence microscopy and image processing software displayed efficient utilization in the identification and quantification of silica bodies inK. macrantha leaf tissues, which should applicable to biological, ecological and geological studies of grasses including forage, turf grasses and cereal crops.