2015 Brainhack Proceedings. Issue 1 (November 2016)

• Record Type: Journal Article
• Authors: Craddock, R.; Bellec, Pierre; Margules, Daniel; Nichols, B.; Pfannmöller, Jörg; Badhwar, AmanPreet; Kennedy, David; Poline, Jean-Baptiste; Toro, Roberto; Cipollini, Ben; Rokem, Ariel; Clark, Daniel; Gorgolewski, Krzysztof; Craddock, R.; Craddock, R.; Clark, Daniel; Das, Samir; Madjar, Cécile; Sengupta, Ayan; Mohades, Zia; Dery, Sebastien; Deng, Weiran; Earl, Eric; Demeter, Damion; Mills, Kate; Mihai, Glad; Ruzic, Luka; Ketz, Nick; Reineberg, Andrew; Reddan, Marianne; Goddings, Anne-Lise; Gonzalez-Castillo, Javier; Gorgolewski, Krzysztof; Froehlich, Caroline; Dekel, Gil; Margulies, Daniel; Craddock, R.; Fulcher, Ben; Glatard, Tristan; Das, Samir; Adalat, Reza; Beck, Natacha; Bernard, Rémi; Khalili-Mahani, Najmeh; Rioux, Pierre; Rousseau, Marc-Étienne; Evans, Alan; Halchenko, Yaroslav; Castello, Matteo; Hernández-Pérez, Raúl; Morales, Edgar; Cuaya, Laura; Ito, Kaori; Liew, Sook-Lei; Johnson, Hans; Kan, Erik; Anglin, Julia; Borich, Michael; Jahanshad, Neda; Thompson, Paul; Liew, Sook-Lei; Margulies, Daniel; Falkiewicz, Marcel; Huntenburg, Julia; O'Connor, David; Clark, Daniel; Milham, Michael; Craddock, R.; Pereira, Ramon; Heinsfeld, Anibal; Franco, Alexandre; Buchweitz, Augusto; Meneguzzi, Felipe; Pfannmöller, Jörg; Mesquita, Rickson; Herrera, Luis; Dentico, Daniela; Sochat, Vanessa; Nichols, B.; Heinsfeld, Anibal; Franco, Alexandre; Buchweitz, Augusto; Meneguzzi, Felipe; Villalon-Reina, Julio; Garyfallidis, Eleftherios;
• Is Part Of: GigaScience. Volume 5:Issue 1(2016)
• Page Start: 1
• Page End: 26
• Publication Date: 2016-11
• Subjects: Information storage and retrieval systems -- Research -- Periodicals; Biology -- Research -- Periodicals; Medical sciences -- Research -- Periodicals; Database management -- Periodicals; 570.285
• DOI: 10.1186/s13742-016-0147-0
• Languages: English
• ISSNs: 2047-217X

Abstract

Table of contents I1 Introduction to the 2015 Brainhack Proceedings R. Cameron Craddock, Pierre Bellec, Daniel S. Margules, B. Nolan Nichols, Jörg P. Pfannmöller A1 Distributed collaboration: the case for the enhancement of Brainspell's interface AmanPreet Badhwar, David Kennedy, Jean-Baptiste Poline, Roberto Toro A2 Advancing open science through NiData Ben Cipollini, Ariel Rokem A3 Integrating the Brain Imaging Data Structure (BIDS) standard into C-PAC Daniel Clark, Krzysztof J. Gorgolewski, R. Cameron Craddock A4 Optimized implementations of voxel-wise degree centrality and local functional connectivity density mapping in AFNI R. Cameron Craddock, Daniel J. Clark A5 LORIS: DICOM anonymizer Samir Das, Cécile Madjar, Ayan Sengupta, Zia Mohades A6 Automatic extraction of academic collaborations in neuroimaging Sebastien Dery A7 NiftyView: a zero-footprint web application for viewing DICOM and NIfTI files Weiran Deng A8 Human Connectome Project Minimal Preprocessing Pipelines to Nipype Eric Earl, Damion V. Demeter, Kate Mills, Glad Mihai, Luka Ruzic, Nick Ketz, Andrew Reineberg, Marianne C. Reddan, Anne-Lise Goddings, Javier Gonzalez-Castillo, Krzysztof J. Gorgolewski A9 Generating music with resting-state fMRI data Caroline Froehlich, Gil Dekel, Daniel S. Margulies, R. Cameron Craddock A10 Highly comparable time-series analysis in Nitime Ben D. Fulcher A11 Nipype interfaces in CBRAIN Tristan Glatard, Samir Das, Reza Adalat, Natacha Beck, Rémi Bernard, Najmeh Khalili-Mahani, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans A12 DueCredit: automated collection of citations for software, methods, and data Yaroslav O. Halchenko, Matteo Visconti di Oleggio Castello A13 Open source low-cost device to register dog's heart rate and tail movement Raúl Hernández-Pérez, Edgar A. Morales, Laura V. Cuaya A14 Calculating the Laterality Index Using FSL for Stroke Neuroimaging Data Kaori L. Ito, Sook-Lei Liew A15 Wrapping FreeSurfer 6 for use in high-performance computing environments Hans J. Johnson A16 Facilitating big data meta-analyses for clinical neuroimaging through ENIGMA wrapper scripts Erik Kan, Julia Anglin, Michael Borich, Neda Jahanshad, Paul Thompson, Sook-Lei Liew A17 A cortical surface-based geodesic distance package for Python Daniel S Margulies, Marcel Falkiewicz, Julia M Huntenburg A18 Sharing data in the cloud David O'Connor, Daniel J. Clark, Michael P. Milham, R. Cameron Craddock A19 Detecting task-based fMRI compliance using plan abandonment techniques Ramon Fraga Pereira, Anibal Sólon Heinsfeld, Alexandre Rosa Franco, Augusto Buchweitz, Felipe Meneguzzi A20 Self-organization and brain function Jörg P. Pfannmöller, Rickson Mesquita, Luis C.T. Herrera, Daniela Dentico A21 The Neuroimaging Data Model (NIDM) API Vanessa Sochat, B Nolan Nichols A22 NeuroView: a customizable browser-base utility Anibal Sólon Heinsfeld, Alexandre Rosa Franco, Augusto Buchweitz, Felipe Meneguzzi A23 DIPY: Brain tissue classification Julio E. Villalon-Reina, Eleftherios Garyfallidis