Proteomic and metabolomic profiles demonstrate variation among free-living and symbiotic vibrio fischeri biofilms. Issue 1 (December 2015)

• Record Type: Journal Article
• Authors: Chavez-Dozal, Alba; Gorman, Clayton; Nishiguchi, Michele
• Is Part Of: BMC microbiology. Volume 15:Issue 1(2015)
• Page Start: 1
• Page End: 11
• Publication Date: 2015-12
• Subjects: V. fischeri -- Symbiosis -- Biofilms -- Planktonic -- Mass spectrometry -- Liquid chromatography -- Metabolomics -- Proteomics; Microbiology -- Periodicals; 579.05
• DOI: 10.1186/s12866-015-0560-z
• Languages: English
• ISSNs: 1471-2180

Abstract

Abstract Background A number of bacterial species are capable of growing in various life history modes that enable their survival and persistence in both planktonic free-living stages as well as in biofilm communities. Mechanisms contributing to either planktonic cell or biofilm persistence and survival can be carefully delineated using multiple differential techniques (e.g ., genomics and transcriptomics). In this study, we present both proteomic and metabolomic analyses ofVibrio fischeri biofilms, demonstrating the potential for combined differential studies for elucidating life-history switches important for establishing the mutualism through biofilm formation and host colonization. Methods The study used a metabolomics/proteomics or "meta-proteomics" approach, referring to the combined protein and metabolic data analysis that bridges the gap between phenotypic changes (planktonic cell to biofilm formation) with genotypic changes (reflected in protein/metabolic profiles). Our methods used protein shotgun construction, followed by liquid chromatography coupled with mass spectrometry (LC-MS) detection and quantification for both free-living and biofilm formingV. fischeri . Results We present a time-resolved picture of approximately 100 proteins (2D-PAGE and shotgun proteomics) and 200 metabolites that are present during the transition from planktonic growth to community biofilm formation. Proteins involved in stress response, DNA repair damage, and transport appeared to be highly expressed during the biofilm state. In addition, metabolites detected in biofilms correspond to components of the exopolysaccharide (EPS) matrix (sugars and glycerol-derived). Alterations in metabolic enzymes were paralleled by more pronounced changes in concentration of intermediates from the glycolysis pathway as well as several amino acids. Conclusions This combined analysis of both types of information (proteins, metabolites) has provided a more complete picture of the biochemical processes of biofilm formation and what determines the switch between the two life history strategies. The reported findings have broad implications forVibrio biofilm ecology, and mechanisms for successful survival in the host and environment.