Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds. Issue 1 (January 2013)

• Record Type: Journal Article
• Authors: Finster, Kai; Kjeldsen, Kasper; Kube, Michael; Reinhardt, Richard; Mussmann, Marc; Amann, Rudolf; Schreiber, Lars
• Is Part Of: Standards in genomic sciences. Volume 8:Issue 1(2013)
• Page Start: 58
• Page End: 68
• Publication Date: 2013-01
• Subjects: Sulfur-cycle -- thiosulfate -- sulfite -- sulfur disproportionation -- marine -- sediment; Genomics -- Periodicals; Genomics -- Periodicals; Genomics; Periodicals; 572.8605
• DOI: 10.4056/sigs.3777412
• Languages: English
• ISSNs: 1944-3277

Abstract

Abstract Desulfocapsa sulfexigens SB164P1 (DSM 10523) belongs to the deltaproteobacterial familyDesulfobulbaceae and is one of two validly described members of its genus. This strain was selected for genome sequencing, because it is the first marine bacterium reported to thrive on the disproportionation of elemental sulfur, a process with a unresolved enzymatic pathway in which elemental sulfur serves both as electron donor and electron acceptor. Furthermore, in contrast to its phylogenetically closest relatives, which are dissimilatory sulfate-reducers, D. sulfexigens is unable to grow by sulfate reduction and appears metabolically specialized in growing by disproportionating elemental sulfur, sulfite or thiosulfate with CO, as the sole carbon source. The genome ofD. sulfexigens contains the set of genes that is required for nitrogen fixation. In an acetylene assay it could be shown that the strain reduces acetylene to ethylene, which is indicative for N-fixation. The circular chromosome ofD. sulfexigens SB164P1 comprises 3, 986, 761 bp and harbors 3, 551 protein-coding genes of which 78% have a predicted function based on auto-annotation. The chromosome furthermore encodes 46 tRNA genes and 3 rRNA operons.