Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T). Issue 3 (November 2010)

• Record Type: Journal Article
• Authors: Ngatchou Djao, Olivier; Zhang, Xiaojing; Lucas, Susan; Lapidus, Alla; Glavina Del Rio, Tijana; Nolan, Matt; Tice, Hope; Cheng, Jan-Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Ovchinnikova, Galina; Pati, Amrita; Brambilla, Evelyne; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia; Rohde, Manfred; Sikorski, Johannes; Spring, Stefan; Göker, Markus; Detter, John; Woyke, Tanja; Bristow, James; Eisen, Jonathan; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos; Klenk, Hans-Peter;
• Is Part Of: Standards in genomic sciences. Volume 3:Issue 3(2010)
• Page Start: 267
• Page End: 275
• Publication Date: 2010-11
• Subjects: anaerobic -- motile -- Gram-negative -- syntrophism with methanogen -- crotonate -- butyrate -- isobutyrate -- Syntrophomonadaceae -- GEBA; Genomics -- Periodicals; Genomics -- Periodicals; Genomics; Periodicals; 572.8605
• DOI: 10.4056/sigs.1233249
• Languages: English
• ISSNs: 1944-3277

Abstract

Abstract Syntrophothermus lipocalidus Sekiguchiet al. 2000 is the type species of the genusSyntrophothermus . The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genusSyntrophothermus and the second in the familySyntrophomonadaceae . Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2, 405, 559 bp long genome with its 2, 385 protein-coding and 55 RNA genes is a part of theG enomic E ncyclopedia of B acteria and A rchaea project.