Complete genome sequence of Paenibacillus sp. strain JDR-2. Issue 1 (January 2012)

• Record Type: Journal Article
• Authors: Chow, Virginia; Nong, Guang; St. John, Franz; Rice, John; Dickstein, Ellen; Chertkov, Olga; Bruce, David; Detter, Chris; Brettin, Thomas; Han, James; Woyke, Tanja; Pitluck, Sam; Nolan, Matt; Pati, Amrita; Martin, Joel; Copeland, Alex; Land, Miriam; Goodwin, Lynne; Jones, Jeffrey; Ingram, Lonnie; Shanmugam, Keelnathan; Preston, James
• Is Part Of: Standards in genomic sciences. Volume 6:Issue 1(2012)
• Page Start: 1
• Page End: 10
• Publication Date: 2012-01
• Subjects: aerobic -- mesophile -- Gram-positive -- Paenibacillus -- xylanolytic -- xylan; Genomics -- Periodicals; Genomics -- Periodicals; Genomics; Periodicals; 572.8605
• DOI: 10.4056/sigs.2374349
• Languages: English
• ISSNs: 1944-3277

Abstract

Abstract Paenibacillus sp. strain JDR-2, an aggressively xylanolytic bacterium isolated from sweetgum (Liquidambar styraciflua ) wood, is able to efficiently depolymerize, assimilate and metabolize 4-O-methylglucuronoxylan, the predominant structural component of hardwood hemicelluloses. A basis for this capability was first supported by the identification of genes and characterization of encoded enzymes and has been further defined by the sequencing and annotation of the complete genome, which we describe. In addition to genes implicated in the utilization of β-1, 4-xylan, genes have also been identified for the utilization of other hemicellulosic polysaccharides. The genome ofPaenibacillus sp. JDR-2 contains 7, 184, 930 bp in a single replicon with 6, 288 protein-coding and 122 RNA genes. Uniquely prominent are 874 genes encoding proteins involved in carbohydrate transport and metabolism. The prevalence and organization of these genes support a metabolic potential for bioprocessing of hemicellulose fractions derived from lignocellulosic resources.