A risk score model for the prediction of osteosarcoma metastasis. Issue 3 (2nd February 2019)

• Record Type: Journal Article
• Authors: Dong, Siqi; Huo, Hongjun; Mao, Yu; Li, Xin; Dong, Lixin
• Is Part Of: FEBS open bio. Volume 9:Issue 3(2019)
• Page Start: 519
• Page End: 526
• Publication Date: 2019-02-02
• Subjects: metastasis: bioinformatic analysis -- osteosarcoma -- risk score model; Molecular biology -- Periodicals; Cytology -- Periodicals; Life sciences -- Periodicals; Biological Science Disciplines -- Periodicals; Molecular Biology -- Periodicals; Cell Biology -- Periodicals; Cytology; Life sciences; Molecular biology; Periodicals; 572.805
• DOI: 10.1002/2211-5463.12592
• Languages: English
• ISSNs: 2211-5463

Abstract

Abstract : Osteosarcoma is the most common primary solid malignancy of the bone, and its high mortality usually correlates with early metastasis. In this study, we developed a risk score model to help predict metastasis at the time of diagnosis. We downloaded and mined four expression profile datasets associated with osteosarcoma metastasis from the Gene Expression Omnibus. After data normalization, we performed LASSO logistic regression analysis together with 10‐fold cross validation using theGSE21257 dataset. A combination of eight genes ( RAB1, CLEC3B, FCGBP, RNASE3, MDL1, ALOX5AP, VMO1 and ALPK3 ) were identified as being associated with osteosarcoma metastasis. These genes were put into a gene risk score model, and the prediction efficiency of the model was then validated using three independent datasets (GSE33383, GSE66673, andGSE49003 ) by plotting receiver operating characteristic curves. The expression levels of the eight genes in all datasets were shown as heatmaps, and gene ontology gene annotation and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were performed. These eight genes play a role in cancer‐related biological processes, such as apoptosis and biosynthetic processes. Our results may aid in elucidating the possible mechanisms of osteosarcoma metastasis, and may help to facilitate the individual management of patients with osteosarcoma after treatment. Abstract : Core genes associated with the metastasis of osteosarcoma were identified, and a risk score model was constructed, which may facilitate exploration of the underlying mechanisms. This risk score model has provided new insights into the prediction of osteosarcoma metastasis, and has potential prognostic and therapeutic implications for osteosarcoma.