Single-stranded DNA oligomer brush structure is dominated by intramolecular interactions mediated by the ion environment. Issue 47 (21st November 2018)

• Record Type: Journal Article
• Authors: Gil, Phwey S.; Lacks, Daniel J.; Parisse, Pietro; Casalis, Loredana; Nkoua Ngavouka, Maryse D.
• Is Part Of: Soft matter. Volume 14:Issue 47(2018)
• Page Start: 9675
• Page End: 9680
• Publication Date: 2018-11-21
• Subjects: Soft condensed matter -- Periodicals; 530.413
• DOI: 10.1039/c8sm01743c
• Languages: English
• ISSNs: 1744-683X

Abstract

Abstract : Single-stranded DNA (ssDNA) brushes, in which ssDNA oligomers are tethered to surfaces in dense monolayers, are being investigated for potential biosensing applications. Abstract : Single-stranded DNA (ssDNA) brushes, in which ssDNA oligomers are tethered to surfaces in dense monolayers, are being investigated for potential biosensing applications. The structure of the brush can affect the selectivity and the hybridization efficiency of the device. The structure is commonly thought to result from the balance of intramolecular interactions, intermolecular interactions within the monolayer, and molecule–surface interactions. Here, we test the hypothesis that ssDNA oligomer brush structure is dominated by intramolecular interactions. We use AFM to measure the height of an ssDNA brush and molecular dynamics to simulate the end-to-end distance, both as a function of ionic strength of the surrounding solution. The brush height and the molecule end-to-end distance match quantitatively, providing evidence that the brush structure is dominated by intramolecular interactions (mediated by ions). The physical basis of the intramolecular interactions is elucidated by the simulations.