Automation of pattern recognition analysis of dynamic contrast‐enhanced MRI data to characterize intratumoral vascular heterogeneity. Issue 3 (20th July 2017)

• Record Type: Journal Article
• Authors: Han, SoHyun; Stoyanova, Radka; Lee, Hansol; Carlin, Sean D.; Koutcher, Jason A.; Cho, HyungJoon; Ackerstaff, Ellen
• Is Part Of: Magnetic resonance in medicine. Volume 79:Issue 3(2018)
• Page Start: 1736
• Page End: 1744
• Publication Date: 2017-07-20
• Subjects: DCE‐MRI -- pattern recognition analysis -- principal component analysis -- automation -- intratumoral vascular heterogeneity; Nuclear magnetic resonance -- Periodicals; Electron paramagnetic resonance -- Periodicals; 616.07548
• DOI: 10.1002/mrm.26822
• Languages: English
• ISSNs: 0740-3194

Abstract

Abstract : Purpose: To automate dynamic contrast‐enhanced MRI (DCE‐MRI) data analysis by unsupervised pattern recognition (PR) to enable spatial mapping of intratumoral vascular heterogeneity. Methods: Three steps were automated. First, the arrival time of the contrast agent at the tumor was determined, including a calculation of the precontrast signal. Second, four criteria‐based algorithms for the slice‐specific selection of number of patterns (NP) were validated using 109 tumor slices from subcutaneous flank tumors of five different tumor models. The criteria were: half area under the curve, standard deviation thresholding, percent signal enhancement, and signal‐to‐noise ratio (SNR). The performance of these criteria was assessed by comparing the calculated NP with the visually determined NP. Third, spatial assignment of single patterns and/or pattern mixtures was obtained by way of constrained nonnegative matrix factorization. Results: The determination of the contrast agent arrival time at the tumor slice was successfully automated. For the determination of NP, the SNR‐based approach outperformed other selection criteria by agreeing >97% with visual assessment. The spatial localization of single patterns and pattern mixtures, the latter inferring tumor vascular heterogeneity at subpixel spatial resolution, was established successfully by automated assignment from DCE‐MRI signal‐versus‐time curves. Conclusion: The PR‐based DCE‐MRI analysis was successfully automated to spatially map intratumoral vascular heterogeneity. Magn Reson Med 79:1736–1744, 2018. © 2017 International Society for Magnetic Resonance in Medicine.