Next generation breeding. (January 2016)

• Record Type: Journal Article
• Authors: Barabaschi, Delfina; Tondelli, Alessandro; Desiderio, Francesca; Volante, Andrea; Vaccino, Patrizia; Valè, Giampiero; Cattivelli, Luigi
• Is Part Of: Plant science. Volume 242(2016:Jan.)
• Page Start: 3
• Page End: 13
• Publication Date: 2016-01
• Subjects: CRISPR/Cas9 Clustered regularly interspaced short palindromic repeats/CRISPR-associated -- GBS genotyping by sequencing -- GEBV genomic estimated breeding values -- GS genomic selection -- GWAS genome-wide association studies -- LD linkage disequilibrium -- MAGIC multi-parent advanced generation intercross -- MAS marker-assisted selection -- NAM nested association mapping -- NGS next generation sequencing -- RIL recombinant inbreed line -- QTL quantitative trait locus -- RAD restriction-site associated DNA -- SNP single-nucleotide polymorphism -- TALEN transcription activator-like effector nucleases -- TILLING targeting induced local lesions in genomes -- ZFN zinc finger nucleases; Next generation sequencing -- Molecular markers -- Allele diversity -- Genomic selection -- Genome editing -- Plant breeding; Botany -- Periodicals; Botanique -- Périodiques; 580
• DOI: 10.1016/j.plantsci.2015.07.010
• Languages: English
• ISSNs: 0168-9452

Abstract

Highlights: Low cost sequencing technologies has revolutionized plant breeding. Low cost high throughput markers support genomic selection. Sequencing information allow genome editing. Next generation sequencing boost a next generation breeding. Abstract: The genomic revolution of the past decade has greatly improved our understanding of the genetic make-up of living organisms. The sequencing of crop genomes has completely changed our vision and interpretation of genome organization and evolution. Re-sequencing allows the identification of an unlimited number of markers as well as the analysis of germplasm allelic diversity based on allele mining approaches. High throughput marker technologies coupled with advanced phenotyping platforms provide new opportunities for discovering marker-trait associations which can sustain genomic-assisted breeding. The availability of genome sequencing information is enabling genome editing (site-specific mutagenesis), to obtain gene sequences desired by breeders. This review illustrates how next generation sequencing-derived information can be used to tailor genomic tools for different breeders' needs to revolutionize crop improvement.