Pre-processing of microarray gene expression data for classification using adaptive feature selection and imputation of non-ignorable missing values. (2016)

• Record Type: Journal Article
• Authors: Priya, R. Devi; Sivaraj, R.
• Is Part Of: International journal of data mining and bioinformatics. Volume 16:Number 3(2016)
• Page Start: 183
• Page End: 204
• Publication Date: 2016
• Subjects: microarray datasets -- feature selection -- missing values -- genetic algorithms -- classification accuracy -- pre-processing -- gene expression data -- bioinformatics -- imputation accuracy; Data mining -- Periodicals; Bioinformatics -- Periodicals; 006.312
• Languages: English
• ISSNs: 1748-5673

Abstract

Microarray datasets often contain many features and incomplete values. To address these issues, this paper introduces a method called Genetic Algorithm-Based Adaptive Feature Selection with Missing value Imputation (GAFSMI) with two contributions. First, for identifying the noteworthy features, Genetic Algorithm-Based Adaptive Feature Selection (GAFS) is proposed. Then for imputing the non-ignorable missing values, Bayesian Genetic Algorithm (BAGEL) integrating genetic algorithm with Bayesian principles is introduced. These two pre-processing steps generate the complete dataset with optimal feature subset to perform classification with better accuracy. The proposed algorithm is implemented on eight microarray datasets and it is observed that GAFS selects optimal feature subset with appreciable classification accuracy than other feature selection techniques. The imputation accuracy of BAGEL measured is found to be better than other standard imputation techniques at different missing rates (5% to 40%). Classification accuracy is improved in all the datasets processed with GAFS and BAGEL.