The Long Non‐Coding RNA Transcriptome Landscape in CHO Cells Under Batch and Fed‐Batch Conditions. Issue 10 (5th June 2018)

• Record Type: Journal Article
• Authors: Vito, Davide; Smales, Christopher Mark
• Is Part Of: Biotechnology journal. Volume 13:Issue 10(2018)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2018-06-05
• Subjects: Chinese hamster ovary (CHO) cells -- long non‐coding RNAs (lncRNAs) -- microarray -- recombinant protein production -- transcriptome; Biotechnology -- Periodicals; 660.605
• DOI: 10.1002/biot.201800122
• Languages: English
• ISSNs: 1860-6768

Abstract

Abstract : The role of non‐coding RNAs in determining growth, productivity, and recombinant product quality attributes in Chinese hamster ovary (CHO) cells has received much attention in recent years, exemplified by studies into microRNAs in particular. However, other classes of non‐coding RNAs have received less attention. One such class are the non‐coding RNAs known collectively as long non‐coding RNAs (lncRNAs). The authors have undertaken the first landscape analysis of the lncRNA transcriptome in CHO using a mouse based microarray that also provided for the surveillance of the coding transcriptome. The authors report on those lncRNAs present in a model host CHO cell line under batch and fed‐batch conditions on two different days and relate the expression of different lncRNAs to each other. The authors demonstrate that the mouse microarray is suitable for the detection and analysis of thousands of CHO lncRNAs and validated a number of these by qRT‐PCR. The authors then further analyzed the data to identify those lncRNAs whose expression changed the most between growth and stationary phases of culture or between batch and fed‐batch culture to identify potential lncRNA targets for further functional studies with regard to their role in controlling growth of CHO cells. The authors discuss the implications for the publication of this rich dataset and how this may be used by the community. Abstract : Long Non‐Coding RNAs (lncRNAs) are transcripts without a significant coding potential emerging in the last years as key regulators in many different biological processes, ranging from epigenetic variations to splicing and microRNAs regulation or selective enhancement of translation. The authors have undertaken the first landscape analysis of the lncRNA transcriptome in CHO using a mouse based microarray that also provided for the surveillance of the coding transcriptome. The authors report on those lncRNAs present in a model host CHO cell line under batch and fed‐batch conditions on two different days, relate the expression of different lncRNAs to each other, to literature and to pathways enriched in the dataset discussing the implications and the potential use by the community.