The epigenetic alterations of endogenous retroelements in aging. (September 2018)

• Record Type: Journal Article
• Authors: Cardelli, Maurizio
• Is Part Of: Mechanisms of ageing and development. Volume 174(2018)
• Page Start: 30
• Page End: 46
• Publication Date: 2018-09
• Subjects: 5mC 5-methylcytosine -- a-DMR age-differentially methylated region -- Avy agouti viable yellow -- cfDNAs cell-free DNA -- COBRA combined bisulfite restriction analysis -- ERE endogenous retroelement -- ETns early transposons -- hADSC human adipose derived mesenchymal stem cells -- HERV human endogenous retrovirus -- HNSCC head and neck squamous cell carcinoma -- IAP intracisternal A-particle -- LINE long interspersed nuclear element -- LMNB1 lamin B1 -- lncRNA long non coding RNA -- LTR long terminal repeat -- MaLR mammalian apparent LTR retrotransposons -- MeCP2 methyl-CpG-binding protein 2 -- meDIP Methylated DNA immunoprecipitation -- MZ monozygotic -- PBL peripheral blood leukocytes -- SINE short interspersed nuclear element -- TAD topologically associated domain -- TE transposable element -- VNTR variable nucleotide tandem repeat -- WGBS whole-genome bisulfite sequencing; Transposons -- Endogenous retroelements -- DNA methylation -- Epigenetics -- Aging -- Age-related diseases; Aging -- Periodicals; Developmental biology -- Periodicals; Aging -- Periodicals; Developmental Biology -- Periodicals; Vieillissement -- Périodiques; Biologie du développement -- Périodiques; Aging; Developmental biology; Periodicals; 612.67
• DOI: 10.1016/j.mad.2018.02.002
• Languages: English
• ISSNs: 0047-6374

Abstract

Highlights: Endogenous retroelements host most of the CpG sites in the human genome. Various epigenetic alterations involving endogenous retroelements are observed in aging. Tumours are strongly associated with an epigenetic alteration of endogenous retroelements. Various environmental stressors and age-related physiological modification can trigger an epigenetic alteration of endogenous retroelements. An altered epigenetic status of endogenous retroelements can affect gene expression in several ways. Abstract: Endogenous retroelements, transposons that mobilize through RNA intermediates, include some of the most abundant repetitive sequences of the human genome, such as Alu and LINE-1 sequences, and human endogenous retroviruses. Recent discoveries demonstrate that these mobile genetic elements not only act as intragenomic parasites, but also exert regulatory roles in living cells. The risk of genomic instability represented by endogenous retroelements is normally counteracted by a series of epigenetic control mechanisms which include, among the most important, CpG DNA methylation. Indeed, most of the genomic CpG sites subjected to DNA methylation in the nuclear DNA are carried by these repetitive elements. As other parts of the genome, endogenous retroelements and other transposable elements are subjected to deep epigenetic alterations during aging, repeatedly observed in the context of organismal and cellular senescence, in human and other species. This review summarizes the current status of knowledge about the epigenetic alterations occurring in this large, non-genic portion of the genome in aging and age-related conditions, with a focus on the causes and the possible functional consequences of these alterations.