Performance of an open-source heart sound segmentation algorithm on eight independent databases. (1st August 2017)

• Record Type: Journal Article
• Authors: Liu, Chengyu; Springer, David; Clifford, Gari D
• Is Part Of: Physiological measurement. Volume 38:Number 8(2017:Aug.)
• Page Start: 1730
• Page End: 1745
• Publication Date: 2017-08-01
• Subjects: heart sound -- heart sound segmentation -- hidden Markov model (HMM) -- hidden semi-Markov model (HSMM) -- PhysioNet/CinC Challenge; Physiology -- Measurement -- Periodicals; Patient monitoring -- Periodicals; 612
• DOI: 10.1088/1361-6579/aa6e9f
• Languages: English
• ISSNs: 0967-3334

Abstract

Abstract: Objective : Heart sound segmentation is a prerequisite step for the automatic analysis of heart sound signals, facilitating the subsequent identification and classification of pathological events. Recently, hidden Markov model-based algorithms have received increased interest due to their robustness in processing noisy recordings. In this study we aim to evaluate the performance of the recently published logistic regression based hidden semi-Markov model (HSMM) heart sound segmentation method, by using a wider variety of independently acquired data of varying quality. Approach : Firstly, we constructed a systematic evaluation scheme based on a new collection of heart sound databases, which we assembled for the PhysioNet/CinC Challenge 2016. This collection includes a total of more than 120 000 s of heart sounds recorded from 1297 subjects (including both healthy subjects and cardiovascular patients) and comprises eight independent heart sound databases sourced from multiple independent research groups around the world. Then, the HSMM-based segmentation method was evaluated using the assembled eight databases. The common evaluation metrics of sensitivity, specificity, accuracy, as well as the F 1 measure were used. In addition, the effect of varying the tolerance window for determining a correct segmentation was evaluated. Main results : The results confirm the high accuracy of the HSMM-based algorithm on a separate test dataset comprised of 102 306 heart sounds. An average F 1 score of 98.5% for segmenting S1 and systole intervals and 97.2% for segmenting S2 and diastole intervals were observed. The F 1 score was shown to increases with an increases in the tolerance window size, as expected. Significance : The high segmentation accuracy of the HSMM-based algorithm on a large database confirmed the algorithm's effectiveness. The described evaluation framework, combined with the largest collection of open access heart sound data, provides essential resources for evaluators who need to test their algorithms with realistic data and share reproducible results.