Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics. Issue 3 (29th December 2017)

• Record Type: Journal Article
• Authors: Schmid, Sarah; Neuenschwander, Samuel; Pitteloud, Camille; Heckel, Gerald; Pajkovic, Mila; Arlettaz, Raphaël; Alvarez, Nadir
• Is Part Of: Ecology and evolution. Volume 8:Issue 3(2018)
• Page Start: 1480
• Page End: 1495
• Publication Date: 2017-12-29
• Subjects: conservation genetics -- hybridization capture RAD -- phylogeography -- population genetics; Ecology -- Periodicals; Evolution -- Periodicals; 577.05
• DOI: 10.1002/ece3.3699
• Languages: English
• ISSNs: 2045-7758

Abstract

Abstract: Analyzing genetic variation through time and space is important to identify key evolutionary and ecological processes in populations. However, using contemporary genetic data to infer the dynamics of genetic diversity may be at risk of a bias, as inferences are performed from a set of extant populations, setting aside unavailable, rare, or now extinct lineages. Here, we took advantage of new developments in next‐generation sequencing to analyze the spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus, a steppic Southwestern‐Palearctic species. We applied a recently developed hybridization capture (hyRAD) protocol that allows retrieving orthologous sequences even from degraded DNA characteristic of museum specimens. We identified single nucleotide polymorphisms in 68 historical and 51 modern samples in order to (i) unravel the spatial genetic structure across part of the species distribution and (ii) assess the loss of genetic diversity over the past century in Swiss populations. Our results revealed (i) the presence of three potential glacial refugia spread across the European continent and converging spatially in the Alpine area. In addition, and despite a limited population sample size, our results indicate (ii) a loss of allelic richness in contemporary Swiss populations compared to historical populations, whereas levels of expected heterozygosities were not significantly different. This observation is compatible with an increase in the bottleneck magnitude experienced by central European populations of O. decorus following human‐mediated land‐use change impacting steppic habitats. Our results confirm that application of hyRAD to museum samples produces valuable information to study genetic processes across time and space. Abstract : Analyzing genetic variation through time and space is important to identify key evolutionary and ecological processes in populations. Here, we took advantage of the recent development of hyRAD, a technique using hybridization of targeted DNA to RADseq probes to analyze the spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus using fresh and museum specimens. Our results revealed the genetic structure of the species at the scale of the Palearctic and confirmed the value of applying hyRAD to museum specimens for studying genetic processes across time and space.