Towards evidence-based parameter values and priors for aquatic ecosystem modelling. (February 2018)

• Record Type: Journal Article
• Authors: Robson, Barbara J.; Arhonditsis, George B.; Baird, Mark E.; Brebion, Jerome; Edwards, Kyle F.; Geoffroy, Leonie; Hébert, Marie-Pier; van Dongen-Vogels, Virginie; Jones, Emlyn M.; Kruk, Carla; Mongin, Mathieu; Shimoda, Yuko; Skerratt, Jennifer H.; Trevathan-Tackett, Stacey M.; Wild-Allen, Karen; Kong, Xiangzhen; Steven, Andy
• Is Part Of: Environmental modelling & software. Volume 100(2018)
• Page Start: 74
• Page End: 81
• Publication Date: 2018-02
• Subjects: Parameterisation -- Biogeochemical rates -- Biological traits -- Aquatic ecosystems -- Parameter priors -- Seagrass -- Phytoplankton -- Zooplankton -- Remineralisation; Environmental monitoring -- Computer programs -- Periodicals; Ecology -- Computer simulation -- Periodicals; Digital computer simulation -- Periodicals; Computer software -- Periodicals; Environmental Monitoring -- Periodicals; Computer Simulation -- Periodicals; Environnement -- Surveillance -- Logiciels -- Périodiques; Écologie -- Simulation, Méthodes de -- Périodiques; Simulation par ordinateur -- Périodiques; Logiciels -- Périodiques; Computer software; Digital computer simulation; Ecology -- Computer simulation; Environmental monitoring -- Computer programs; Periodicals; Electronic journals; 363.70015118
• DOI: 10.1016/j.envsoft.2017.11.018
• Languages: English
• ISSNs: 1364-8152

Abstract

Abstract: Mechanistic models rely on specification of parameters representing biophysical traits and process rates such as phytoplankton, zooplankton and seagrass growth and respiration rates, organism sizes, stoichiometry, light, temperature and nutrient responses, nutrient-specific excretion rates and detrital stoichiometry and decay rates. Choosing suitable values for these parameters is difficult. Current practise is problematic. This paper presents a resource designed to facilitate an evidence-based approach to parameterisation of aquatic ecosystem models. An online tool is provided which collates relevant, published biological trait and biogeochemical rate observations from many sources and allows users to explore, filter and convert these data in a consistent, reproducible way, to find parameter values and calculate probability distributions. Using this information within a traditional or Bayesian paradigm should provide improved understanding of the uncertainty and predictive capacity of aquatic ecosystem models and provide insight into current sources of structural error in models. Highlights: Current practices in parameterising aquatic ecosystem models can be improved. We present a new resource to inform specification of parameter values. An online tool helps modellers find, filter & transform process rate and trait data. Parameter distributions are presented in a probabilistic framework. This will improve connection between observational science and modelling.