Structure and function of the thermostable l‐asparaginase from Thermococcus kodakarensis. Issue 11 (2nd November 2017)

• Record Type: Journal Article
• Authors: Guo, Jingxu; Coker, Alun R.; Wood, Steve P.; Cooper, Jonathan B.; Chohan, Shahid Mahmood; Rashid, Naeem; Akhtar, Muhummad
• Is Part Of: Acta crystallographica. Volume 73:Issue 11(2017)
• Page Start: 889
• Page End: 895
• Publication Date: 2017-11-02
• Subjects: protein crystallography -- structural biology -- l‐asparaginase -- Thermococcus kodakarensis; X-ray crystallography -- Periodicals; Crystallography -- Periodicals; Molecular biology -- Periodicals; Molecular structure -- Periodicals; Biomolecules -- Structure -- Periodicals; Cytology -- Periodicals; Biomolecules -- Structure; Crystallography; Cytology; Molecular biology; Molecular structure; X-ray crystallography; Periodicals; 548
• DOI: 10.1107/S2059798317014711
• Languages: English
• ISSNs: 2059-7983

Abstract

Abstract : The crystal structure of thel ‐asparaginase from T. kodakarensis has been determined at 2.18 Å resolution, revealing a number of distinctive structural features. This enzyme has many applications in food processing and chemotherapy. Abstract : l ‐Asparaginases catalyse the hydrolysis of asparagine to aspartic acid and ammonia. In addition, l ‐asparaginase is involved in the biosynthesis of amino acids such as lysine, methionine and threonine. These enzymes have been used as chemotherapeutic agents for the treatment of acute lymphoblastic leukaemia and other haematopoietic malignancies since the tumour cells cannot synthesize sufficientl ‐asparagine and are thus killed by deprivation of this amino acid.l ‐Asparaginases are also used in the food industry and have potential in the development of biosensors, for example for asparagine levels in leukaemia. The thermostable type Il ‐asparaginase from Thermococcus kodakarensis (TkA) is composed of 328 amino acids and forms homodimers in solution, with the highest catalytic activity being observed at pH 9.5 and 85°C. It has a K m value of 5.5 m M forl ‐asparagine, with no glutaminase activity being observed. The crystal structure of TkA has been determined at 2.18 Å resolution, confirming the presence of two α/β domains connected by a short linker region. The N‐terminal domain contains a highly flexible β‐hairpin which adopts `open' and `closed' conformations in different subunits of the solved TkA structure. In previously solvedl ‐asparaginase structures this β‐hairpin was only visible when in the `closed' conformation, whilst it is characterized with good electron density in all of the subunits of the TkA structure. A phosphate anion resides at the active site, which is formed by residues from both of the neighbouring monomers in the dimer. The high thermostability of TkA is attributed to the high arginine and salt‐bridge content when compared with related mesophilic enzymes.