Classification of cardiovascular tissues using LBP based descriptors and a cascade SVM. (August 2017)

• Record Type: Journal Article
• Authors: Mazo, Claudia; Alegre, Enrique; Trujillo, Maria
• Is Part Of: Computer methods and programs in biomedicine. Volume 147(2017)
• Page Start: 1
• Page End: 10
• Publication Date: 2017-08
• Subjects: Fundamental tissues -- Histology images -- Image processing -- Organs of the cardiovascular system -- Automatic classification; Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2017.06.003
• Languages: English
• ISSNs: 0169-2607

Abstract

Highlights: We have proposed a new approach to classification of cardiovascular tissues using LBP based descriptors and a cascade SVM. This kind of automatic systems would be very helpful to reinforce the learning process of histologists, biologists, pathologists, and related disciplines. This type of systems could allow sorting and labelling automatically large repositories or sets of images obtained by digital technology. This all translates into better-formed professionals with less social and economic investment. Abstract: Background and Objective: Histological images have characteristics, such as texture, shape, colour and spatial structure, that permit the differentiation of each fundamental tissue and organ. Texture is one of the most discriminative features. The automatic classification of tissues and organs based on histology images is an open problem, due to the lack of automatic solutions when treating tissues without pathologies. Method: In this paper, we demonstrate that it is possible to automatically classify cardiovascular tissues using texture information and Support Vector Machines (SVM). Additionally, we realised that it is feasible to recognise several cardiovascular organs following the same process. The texture of histological images was described using Local Binary Patterns (LBP), LBP Rotation Invariant (LBPri), Haralick features and different concatenations between them, representing in this way its content. Using a SVM with linear kernel, we selected the more appropriate descriptor that, for this problem, was a concatenation of LBP and LBPri. Due to the small number of the images available, we could not follow an approach based on deep learning, but we selected the classifier who yielded the higher performance by comparing SVM with Random Forest and Linear Discriminant Analysis. Once SVM was selected as the classifier with a higher area under the curve that represents both higher recall and precision, we tuned it evaluating different kernels, finding that a linear SVM allowed us to accurately separate four classes of tissues: (i) cardiac muscle of the heart, (ii) smooth muscle of the muscular artery, (iii) loose connective tissue, and (iv) smooth muscle of the large vein and the elastic artery. The experimental validation was conducted using 3000 blocks of 100 × 100 sized pixels, with 600 blocks per class and the classification was assessed using a 10-fold cross-validation. Results: using LBP as the descriptor, concatenated with LBPri and a SVM with linear kernel, the main four classes of tissues were recognised with an AUC higher than 0.98. A polynomial kernel was then used to separate the elastic artery and vein, yielding an AUC in both cases superior to 0.98. Conclusion: Following the proposed approach, it is possible to separate with very high precision (AUC greater than 0.98) the fundamental tissues of the cardiovascular system along with some organs, such as the heart, arteries and veins.