Mining for pairs: shared clinic visit dates identify steady HIV‐positive partnerships. Issue 9 (4th April 2017)

• Record Type: Journal Article
• Authors: Marzel, A; Shilaih, M; Turk, T; Campbell, NK; Yang, W‐L; Böni, J; Yerly, S; Klimkait, T; Aubert, V; Furrer, H; Calmy, A; Battegay, M; Cavassini, M; Bernasconi, E; Schmid, P; Metzner, KJ; Günthard, HF; Kouyos, RD
• Other Names: Bucher H. C. investigator.; Burton‐Jeangros C. investigator.; Dollenmaier G. investigator.; Egger M. investigator.; Elzi L. investigator.; Fehr J. investigator.; Fellay J. investigator.; Fux C. A. investigator.; Gorgievski M. investigator.; Haerry D. investigator.; Hasse B. investigator.; Hirsch H. H. investigator.; Hoffmann M. investigator.; Hösli I. investigator.; Kahlert C. investigator.; Kaiser L. investigator.; Keiser O. investigator.; Kovari H. investigator.; Ledergerber B. investigator.; Martinetti G. investigator.; de Tejada B. Martinez investigator.; Müller N. investigator.; Nadal D. investigator.; Nicca D. investigator.; Pantaleo G. investigator.; Rauch A. investigator.; Regenass S. investigator.; Rickenbach M. investigator.; Rudin C. investigator.; Schöni‐Affolter F. investigator.; Schmid P. investigator.; Schüpbach J. investigator.; Speck R. investigator.; Tarr P. investigator.; Trkola A. investigator.; Vernazza P. investigator.; Weber R. investigator.; Yerly S. investigator.;
• Is Part Of: HIV medicine. Volume 18:Issue 9(2017:Oct.)
• Page Start: 667
• Page End: 676
• Publication Date: 2017-04-04
• Subjects: cohort studies -- data mining -- epidemiology -- HIV -- phylogeny -- transmission; HIV infections -- Treatment -- Periodicals; HIV-positive persons -- Periodicals; HIV infections -- Treatment -- Decision making -- Periodicals; 616.9792
• DOI: 10.1111/hiv.12507
• Languages: English
• ISSNs: 1464-2662

Abstract

Abstract : Objectives: Here we examined the hypothesis that some stable HIV‐infected partnerships can be found in cohort studies, as the patients frequently attend the clinic visits together. Methods: Using mathematical approximations and shuffling to derive the probabilities of sharing a given number of visits by chance, we identified and validated couples that may represent either transmission pairs or serosorting couples in a stable relationship. Results: We analysed 434 432 visits for 16 139 Swiss HIV Cohort Study patients from 1990 to 2014. For 89 pairs, the number of shared visits exceeded the number expected. Of these, 33 transmission pairs were confirmed on the basis of three criteria: an extensive phylogenetic tree, a self‐reported steady HIV‐positive partnership, and risk group affiliation. Notably, 12 of the validated transmission pairs (36%; 12 of 33) were of a mixed ethnicity with a large median age gap [17.5 years; interquartile range (IQR) 11.8−22 years] and these patients harboured HIV‐1 of predominantly non‐B subtypes, suggesting imported infections. Conclusions: In the context of the surge in research interest in HIV transmission pairs, this simple method widens the horizons of research on within‐pair quasi‐species exchange, transmitted drug resistance and viral recombination at the biological level and targeted prevention at the public health level.