Gogadget: An R Package for Interpretation and Visualization of GO Enrichment Results. Issue 5 (21st December 2016)
- Record Type:
- Journal Article
- Title:
- Gogadget: An R Package for Interpretation and Visualization of GO Enrichment Results. Issue 5 (21st December 2016)
- Main Title:
- Gogadget: An R Package for Interpretation and Visualization of GO Enrichment Results
- Authors:
- Nota, Benjamin
- Abstract:
- Abstract: Gene expression profiling followed by gene ontology (GO) term enrichment analysis can generate long lists of significant GO terms. To interpret these results and get biological insight in the data, filtering and rearranging these long lists of GO terms might be desirable. The R package gogadget provides functions to modify GO analysis results, with a simple filter strategy. Furthermore, it groups redundant GO terms with hierarchical clustering and presents the results in a colorful heatmap. The filtered GO term enrichment results can also be exported by the package for subsequent analysis in Cytoscape Enrichment Map. The R package is freely available under the terms of the GNU GPLv3 athttps://sourceforge.net/projects/gogadget/ . Abstract :
- Is Part Of:
- Molecular informatics. Volume 36:Issue 5/6(2017)
- Journal:
- Molecular informatics
- Issue:
- Volume 36:Issue 5/6(2017)
- Issue Display:
- Volume 36, Issue 5/6 (2017)
- Year:
- 2017
- Volume:
- 36
- Issue:
- 5/6
- Issue Sort Value:
- 2017-0036-NaN-0000
- Page Start:
- n/a
- Page End:
- n/a
- Publication Date:
- 2016-12-21
- Subjects:
- Gene ontology -- GO -- gene expression -- RNA-Seq
Cheminformatics -- Periodicals
QSAR (Biochemistry) -- Periodicals
Structure-activity relationships (Biochemistry) -- Periodicals
Drugs -- Structure-activity relationships -- Periodicals
615.19 - Journal URLs:
- http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1868-1751 ↗
http://www3.interscience.wiley.com/journal/123236613/home ↗
http://onlinelibrary.wiley.com/ ↗ - DOI:
- 10.1002/minf.201600132 ↗
- Languages:
- English
- ISSNs:
- 1868-1743
- Deposit Type:
- Legaldeposit
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library DSC - 5900.817750
British Library DSC - BLDSS-3PM
British Library HMNTS - ELD Digital store - Ingest File:
- 2865.xml