Nonlinear manifold representation in natural systems: The SOMersault. (March 2017)

• Record Type: Journal Article
• Authors: Clark, S.; Sisson, S.A.; Sharma, A.
• Is Part Of: Environmental modelling & software. Volume 89(2017)
• Page Start: 61
• Page End: 76
• Publication Date: 2017-03
• Subjects: Environmental monitoring -- Computer programs -- Periodicals; Ecology -- Computer simulation -- Periodicals; Digital computer simulation -- Periodicals; Computer software -- Periodicals; Environmental Monitoring -- Periodicals; Computer Simulation -- Periodicals; Environnement -- Surveillance -- Logiciels -- Périodiques; Écologie -- Simulation, Méthodes de -- Périodiques; Simulation par ordinateur -- Périodiques; Logiciels -- Périodiques; Computer software; Digital computer simulation; Ecology -- Computer simulation; Environmental monitoring -- Computer programs; Periodicals; Electronic journals; 363.70015118
• DOI: 10.1016/j.envsoft.2016.11.028
• Languages: English
• ISSNs: 1364-8152

Abstract

Abstract: Natural systems often contain rhythmically fluctuating individual components which, when combined, can result in nonlinear patterns such as cycles, helixes, and parabolas. The self-organizing map (SOM) is a widely used artificial neural network for exploratory data analysis of high dimensional, multivariate data sets, however it encounters limitations when dealing with such highly nonlinear patterns. The SOMersault method is an expansion of the SOM, effective for gaining an understanding of patterns and clusters in natural data sets containing a low dimensional nonlinear manifold set amongst complex high dimensional data measurements. Data clusters become ordered with respect to the nonlinear degrees of freedom in the data, and patterns extracted are closely related to the data they represent. Results are shown on synthetic and real world data, involving a global set of river basins, with clustering and pattern extraction improvements displayed visually and quantified through a new set of geodesic error measures. Highlights: The SOMersault is a modification to the self-organizing map (SOM) method. Environmental data sets often contain inherent lower dimensional nonlinear manifolds. The SOMersault can cluster and visualise data sets containing nonlinear manifolds. Patterns are extracted by 'unrolling' the map along the geodesic surface. The SOMersault is demonstrated on a global data set of river basins.