Beta approximation of ratio distribution and its application to next generation sequencing read counts. Issue 1 (2nd January 2017)

• Record Type: Journal Article
• Authors: Yang, Shengping; Fang, Zhide
• Is Part Of: Journal of applied statistics. Volume 44:Issue 1(2017)
• Page Start: 57
• Page End: 70
• Publication Date: 2017-01-02
• Subjects: Beta distribution -- next-generation sequencing -- paired tumor and normal tissues -- ratio of counts -- statistical artifacts; Primary 62E17 -- Secondary 62P10; Statistics -- Periodicals; 519.5
• DOI: 10.1080/02664763.2016.1158798
• Languages: English
• ISSNs: 0266-4763

Abstract

ABSTRACT: Paired sequencing data are commonly collected in genomic studies to control biological variation. However, existing data processing strategies suffer at low coverage regions, which are unavoidable due to the limitation of current sequencing technology. Furthermore, information contained in the absolute values of the read counts is commonly ignored. We propose a read count ratio processing/modification method, to not only incorporate information contained in the absolute values of paired counts into one variable, but also mitigate the discrete artifact, especially when both counts are small. Simulation shows that the processed variable fits well with a Beta distribution, thus providing an easy tool for down-stream inference analysis.