Conservation in the mechanism of glucuronoxylan hydrolysis revealed by the structure of glucuronoxylan xylanohydrolase (CtXyn30A) from Clostridium thermocellum. Issue 11 (1st November 2016)

• Record Type: Journal Article
• Authors: Freire, Filipe; Verma, Anil; Bule, Pedro; Alves, Victor D.; Fontes, Carlos M. G. A.; Goyal, Arun; Najmudin, Shabir
• Is Part Of: Acta crystallographica. Volume 72:Issue 11(2016)
• Page Start: 1162
• Page End: 1173
• Publication Date: 2016-11-01
• Subjects: cellulosome -- glucuronoxylan endo‐β‐1, 4‐xylanase -- GH30 subfamily 8 -- xylotetraose -- thermophilic enzymes -- substrate cleavage; X-ray crystallography -- Periodicals; Crystallography -- Periodicals; Molecular biology -- Periodicals; Molecular structure -- Periodicals; Biomolecules -- Structure -- Periodicals; Cytology -- Periodicals; Biomolecules -- Structure; Crystallography; Cytology; Molecular biology; Molecular structure; X-ray crystallography; Periodicals; 548
• DOI: 10.1107/S2059798316014376
• Languages: English
• ISSNs: 2059-7983

Abstract

Abstract : The thermostable glucuronoxylan endo‐β‐1, 4‐xylanase from C. thermocellum cleaves the xylan chain specifically at sites containing 4‐ O ‐methylglucuronic acid substitutions. The structure of the ligand‐bound enzyme mutant E225A solved at 1.17 Å resolution shows binding of the xylotetraose‐cleavage oligosaccharides at subsites −3 to +2. Abstract : Glucuronoxylan endo‐β‐1, 4‐xylanases cleave the xylan chain specifically at sites containing 4‐ O ‐methylglucuronic acid substitutions. These enzymes have recently received considerable attention owing to their importance in the cooperative hydrolysis of heteropolysaccharides. However, little is known about the hydrolysis of glucuronoxylans in extreme environments. Here, the structure of a thermostable family 30 glucuronoxylan endo‐β‐1, 4‐xylanase ( Ct Xyn30A) from Clostridium thermocellum is reported. Ct Xyn30A is part of the cellulosome, a highly elaborate multi‐enzyme complex secreted by the bacterium to efficiently deconstruct plant cell‐wall carbohydrates. Ct Xyn30A preferably hydrolyses glucuronoxylans and displays maximum activity at pH 6.0 and 70°C. The structure of Ct Xyn30A displays a (β/α)8 TIM‐barrel core with a side‐associated β‐sheet domain. Structural analysis of the Ct Xyn30A mutant E225A, solved in the presence of xylotetraose, revealed xylotetraose‐cleavage oligosaccharides partially occupying subsites −3 to +2. The sugar ring at the +1 subsite is held in place by hydrophobic stacking interactions between Tyr139 and Tyr200 and hydrogen bonds to the OH group of Tyr227. Although family 30 glycoside hydrolases are retaining enzymes, the xylopyranosyl ring at the −1 subsite of Ct Xyn30A‐E225A appears in the α‐anomeric configuration. A set of residues were found to be strictly conserved in glucuronoxylan endo‐β‐1, 4‐xylanases and constitute the molecular determinants of the restricted specificity displayed by these enzymes. Ct Xyn30A is the first thermostable glucuronoxylan endo‐β‐1, 4‐xylanase described to date. This work reveals that substrate recognition by both thermophilic and mesophilic glucuronoxylan endo‐β‐1, 4‐xylanases is modulated by a conserved set of residues.