A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography. Issue 1 (1st January 2016)

• Record Type: Journal Article
• Authors: Chatake, Toshiyuki; Fujiwara, Satoru
• Is Part Of: Acta crystallographica. Volume 72:Issue 1(2016)
• Page Start: 71
• Page End: 82
• Publication Date: 2016-01-01
• Subjects: neutron crystallography neutron crystallography -- D/H contrast map D/H contrast map -- H/D exchange H/D exchange -- protonation protonation -- hydration hydration; X-ray crystallography -- Periodicals; Crystallography -- Periodicals; Molecular biology -- Periodicals; Molecular structure -- Periodicals; Biomolecules -- Structure -- Periodicals; Cytology -- Periodicals; Biomolecules -- Structure; Crystallography; Cytology; Molecular biology; Molecular structure; X-ray crystallography; Periodicals; 548
• DOI: 10.1107/S2059798315021269
• Languages: English
• ISSNs: 2059-7983

Abstract

Abstract : The deuterium/hydrogen neutron contrast map, which was calculated using subtraction in real space, demonstrated the powerful detectability of H/D exchange in the neutron structure determination of a ribonuclease A crystal. Abstract : A difference in the neutron scattering length between hydrogen and deuterium leads to a high density contrast in neutron Fourier maps. In this study, a technique for determining the deuterium/hydrogen (D/H) contrast map in neutron macromolecular crystallography is developed and evaluated using ribonuclease A. The contrast map between the D2 2 O‐solvent and H2 2 O‐solvent crystals is calculated in real space, rather than in reciprocal space as performed in previous neutron D/H contrast crystallography. The present technique can thus utilize all of the amplitudes of the neutron structure factors for both D2 2 O‐solvent and H2 2 O‐solvent crystals. The neutron D/H contrast maps clearly demonstrate the powerful detectability of H/D exchange in proteins. In fact, alternative protonation states and alternative conformations of hydroxyl groups are observed at medium resolution (1.8 Å). Moreover, water molecules can be categorized into three types according to their tendency towards rotational disorder. These results directly indicate improvement in the neutron crystal structure analysis. This technique is suitable for incorporation into the standard structure‐determination process used in neutron protein crystallography; consequently, more precise and efficient determination of the D‐atom positions is possible using a combination of this D/H contrast technique and standard neutron structure‐determination protocols.