The jmzQuantML programming interface and validator for the mzQuantML data standard. Issue 6 (18th February 2014)
- Record Type:
- Journal Article
- Title:
- The jmzQuantML programming interface and validator for the mzQuantML data standard. Issue 6 (18th February 2014)
- Main Title:
- The jmzQuantML programming interface and validator for the mzQuantML data standard
- Authors:
- Qi, Da
Krishna, Ritesh
Jones, Andrew R - Abstract:
- Abstract : The mzQuantML standard from the HUPO Proteomics Standards Initiative has recently been released, capturing quantitative data about peptides and proteins, following analysis of MS data. We present a Java application programming interface (API) for mzQuantML called jmzQuantML. The API provides robust bridges between Java classes and elements in mzQuantML files and allows random access to any part of the file. The API provides read and write capabilities, and is designed to be embedded in other software packages, enabling mzQuantML support to be added to proteomics software tools (http://code.google.com/p/jmzquantml/ ). The mzQuantML standard is designed around a multilevel validation system to ensure that files are structurally and semantically correct for different proteomics quantitative techniques. In this article, we also describe a Java software tool (http://code.google.com/p/mzquantml‐validator/ ) for validating mzQuantML files, which is a formal part of the data standard.
- Is Part Of:
- Proteomics. Volume 14:Issue 6(2014:Mar.)
- Journal:
- Proteomics
- Issue:
- Volume 14:Issue 6(2014:Mar.)
- Issue Display:
- Volume 14, Issue 6 (2014)
- Year:
- 2014
- Volume:
- 14
- Issue:
- 6
- Issue Sort Value:
- 2014-0014-0006-0000
- Page Start:
- 685
- Page End:
- 688
- Publication Date:
- 2014-02-18
- Subjects:
- Bioinformatics -- Java API -- mzQuantML -- Proteomics Standards Initiative -- XML
Proteins -- Separation -- Periodicals
Bioinformatics -- Periodicals
Proteomics -- Periodicals
Genomes -- Periodicals
Molecular genetics -- Periodicals
572.605 - Journal URLs:
- http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1615-9861 ↗
http://onlinelibrary.wiley.com/ ↗ - DOI:
- 10.1002/pmic.201300281 ↗
- Languages:
- English
- ISSNs:
- 1615-9853
- Deposit Type:
- Legaldeposit
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library DSC - 6936.178000
British Library DSC - BLDSS-3PM
British Library HMNTS - ELD Digital store - Ingest File:
- 2097.xml