Correlation coefficient based supervised locally linear embedding for pulmonary nodule recognition. (November 2016)

• Record Type: Journal Article
• Authors: Wu, Panpan; Xia, Kewen; Yu, Hengyong
• Is Part Of: Computer methods and programs in biomedicine. Volume 136(2016)
• Page Start: 97
• Page End: 106
• Publication Date: 2016-11
• Subjects: Dimensionality reduction -- Supervised locally linear embedding -- Spearman's rank correlation coefficient -- Pulmonary nodule recognition; Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2016.08.009
• Languages: English
• ISSNs: 0169-2607

Abstract

Highlights: A correlation coefficient is introduced to adjust the distance metric in the supervised locally linear embedding. New distance metric ensures more suitable neighbors be chosen and thus enhances the discriminating power of embedded data. The method is validated on a clinical lung image database. Abstract: Background and objective: Dimensionality reduction techniques are developed to suppress the negative effects of high dimensional feature space of lung CT images on classification performance in computer aided detection (CAD) systems for pulmonary nodule detection. Methods: An improved supervised locally linear embedding (SLLE) algorithm is proposed based on the concept of correlation coefficient. The Spearman's rank correlation coefficient is introduced to adjust the distance metric in the SLLE algorithm to ensure that more suitable neighborhood points could be identified, and thus to enhance the discriminating power of embedded data. The proposed Spearman's rank correlation coefficient based SLLE (SC 2 SLLE) is implemented and validated in our pilot CAD system using a clinical dataset collected from the publicly available lung image database consortium and image database resource initiative (LICD-IDRI). Particularly, a representative CAD system for solitary pulmonary nodule detection is designed and implemented. After a sequential medical image processing steps, 64 nodules and 140 non-nodules are extracted, and 34 representative features are calculated. The SC 2 SLLE, as well as SLLE and LLE algorithm, are applied to reduce the dimensionality. Several quantitative measurements are also used to evaluate and compare the performances. Results: Using a 5-fold cross-validation methodology, the proposed algorithm achieves 87.65% accuracy, 79.23% sensitivity, 91.43% specificity, and 8.57% false positive rate, on average. Experimental results indicate that the proposed algorithm outperforms the original locally linear embedding and SLLE coupled with the support vector machine (SVM) classifier. Conclusions: Based on the preliminary results from a limited number of nodules in our dataset, this study demonstrates the great potential to improve the performance of a CAD system for nodule detection using the proposed SC 2 SLLE.