In silico Exploration of the Conformational Universe of GPCRs. Issue 6 (27th May 2016)

• Record Type: Journal Article
• Authors: Rodríguez‐Espigares, Ismael; Kaczor, Agnieszka A.; Selent, Jana
• Is Part Of: Molecular informatics. Volume 35:Issue 6/7(2016)
• Page Start: 227
• Page End: 237
• Publication Date: 2016-05-27
• Subjects: Membrane proteins -- Signal transduction -- Molecular dynamics -- Conformation analysis -- Drug design; Cheminformatics -- Periodicals; QSAR (Biochemistry) -- Periodicals; Structure-activity relationships (Biochemistry) -- Periodicals; Drugs -- Structure-activity relationships -- Periodicals; 615.19
• DOI: 10.1002/minf.201600012
• Languages: English
• ISSNs: 1868-1743

Abstract

Abstract: The structural plasticity of G protein coupled receptors (GPCRs) leads to a conformational universe going from inactive to active receptor states with several intermediate states. Many of them have not been captured yet and their role for GPCR activation is not well understood. The study of this conformational space and the transition dynamics between different receptor populations is a major challenge in molecular biophysics. The rational design of effector molecules that target such receptor populations allows fine‐tuning receptor signalling with higher specificity to produce drugs with safer therapeutic profiles. In this minireview, we outline highly conserved receptor regions which are considered determinant for the establishment of distinct receptor states. We then discuss in‐silico approaches such as dimensionality reduction methods and Markov State Models to explore the GPCR conformational universe and exploit the obtained conformations through structure‐based drug design. Abstract :