Evaluation of the DNA barcoding approach to develop a reference data-set for the threatened flora of Sicily. (3rd July 2016)

• Record Type: Journal Article
• Authors: Giovino, A.; Marino, P.; Domina, G.; Scialabba, A.; Schicchi, R.; Diliberto, G.; Rizza, C.; Scibetta, S.
• Is Part Of: Plant biosystems. Volume 150:Number 4(2016)
• Page Start: 631
• Page End: 640
• Publication Date: 2016-07-03
• Subjects: Mediterranean threatened flora -- barcoding identification -- matK -- rbcL reference database; Botany -- Periodicals; Biological systems -- Periodicals; Plants -- Periodicals; 581
• DOI: 10.1080/11263504.2014.989285
• Languages: English
• ISSNs: 1126-3504

Abstract

Abstract : The Mediterranean Basin is one of the most significantly altered World Biodiversity Hotspots with extensive habitat loss and fast genetic population erosion, for which urgent biodiversity reconnaissance and preservation actions are required. In particular, Sicily has about 600 taxa classified as threatened or near-threatened. The correct recognition and identification of such biodiversity is required for supporting further activities. The objective of this work is to assess the ability of the DNA barcoding approach to identify different taxonomic groups from a collection of the most threatened plant taxa, throughout natural Sicilian populations. The evaluation of the DNA barcoding core markers, rbc L and mat K, was carried out on 30 taxa belonging to 13 families. DNA barcode fragments were recovered from all taxa (100%). The rbc L gene was recovered from 97% of the taxa and mat K gene from 73%. In this test, 19 taxa overall (63%) were totally resolved at the specific or subspecific level, by at least one of the core markers. Fourteen of the 17 most threatened taxa (EN, CR) included in this work were totally discriminated. The mat K and rbc L locus, respectively, resolved 64% and 48% of the taxa successfully sequenced. The mat K gene expressed the highest genetic distance (K2P value), from 0.4% to 8.6%, against a range of 0.1–2% of rbc L gene. However, the rbc L gene appeared a good compromise between PCR, sequencing success and species-level resolution. Cryptic groups suggest the implementation of additional barcoding markers or different primer combinations, particularly for mat K, in order to increase the performances. However, this preliminary result confirms the potential of the barcoding approach for quick identification of unknown and heterogeneous plant groups to generate a dedicated reference data-set of the threatened Sicilian flora for a wide range of applications.