Experimental (FT‐IR) and theoretical (DFT) studies on prototropy and H‐bond formation for pyrazine‐2‐amidoxime. (4th February 2016)

• Record Type: Journal Article
• Authors: Głębocka, Angelika; Raczyńska, Ewa D.; Chylewska, Agnieszka; Makowski, Mariusz
• Is Part Of: Journal of physical organic chemistry. Volume 29:Number 7(2016)
• Page Start: 326
• Page End: 335
• Publication Date: 2016-02-04
• Subjects: DFT -- FT‐IR spectroscopy -- H‐bond -- prototropy -- pyrazine‐2‐amidoxime; Chemistry, Physical organic -- Periodicals; 547.1
• DOI: 10.1002/poc.3538
• Languages: English
• ISSNs: 0894-3230

Abstract

Abstract: The results of the firststructural studies (with the use of both experimental and theoretical methods) on pyrazine‐2‐amidoxime ( PAOX ) were shown and discussed. FT‐IR spectra were recorded in different concentrations of the PAOX in apolar solvent to check the possibility of the inter‐ orintramolecular hydrogen‐bond formation. All possible tautomers–rotamers of PAOX were then theoretically considered at the DFT(B3LYP)/6‐311+G** level in vacuo . For selected isomers, calculations were also performed at higher levels of theory {B3LYP/6‐311+G(3df, 2p) and G3B3}. Based on the results of DFT calculations, the most stable isomers were found, and their total free energies and infrared spectra were calculated. The energy variation plots for the N8C7N9O10 and N1C2C7N9 dihedral angles were also computed to find two energy barriers, one for E / Z isomerization around the C7N9 double bond and the other one for rotation of the pyrazinyl ring around the C2C7 single bond. The results show that the stability of the PAOX isomers strongly depend on their configuration and orientation of the substituents. The possibilities of inter‐ andintramolecular hydrogen bonds were also experimentally and theoretically checked. Finally, a potential of mean force was determined in CHCl3 for a dimer of PAOX with hexamethylphosphoramide. Both, experimental and theoretical results are in agreement. Copyright © 2016 John Wiley & Sons, Ltd. Abstract : Structural studies with the use of both experimental and theoretical methods on pyrazine‐2‐amidoxime ( PAOX ) were shown and discussed. All possible and stable tautomeric forms [(including, for each tautomer, all possible configurations and conformations (isomers‐rotamers)] of PAOX were considered. It was found that PAOX formed the intermolecular hydrogen bond with HMPA . The energy barriers of the transitions from the Z(A1 ) to E(A7 ) andA1 toA5 conformations, respectively, were computed. These values confirmed thatA1 was also found thermodynamically stable.