Pressure‐induced conformational switch of an interfacial protein. Issue 6 (16th April 2016)

• Record Type: Journal Article
• Authors: Johnson, Quentin R.; Lindsay, Richard J.; Nellas, Ricky B.; Shen, Tongye
• Is Part Of: Proteins. Volume 84:Issue 6(2016)
• Page Start: 820
• Page End: 827
• Publication Date: 2016-04-16
• Subjects: pressure activation -- gating motion -- interfacial protein -- molecular dynamics simulation -- barophilic enzyme; Proteins -- Periodicals; Proteins -- Periodicals; 572.6
• DOI: 10.1002/prot.25031
• Languages: English
• ISSNs: 0887-3585

Abstract

ABSTRACT: A special class of proteins adopts an inactive conformation in aqueous solution and activates at an interface (such as the surface of lipid droplet) by switching their conformations. Lipase, an essential enzyme for breaking down lipids, serves as a model system for studying such interfacial proteins. The underlying conformational switch of lipase induced by solvent condition is achieved through changing the status of the gated substrate‐access channel. Interestingly, a lipase was also reported to exhibit pressure activation, which indicates it is drastically active at high hydrostatic pressure. To unravel the molecular mechanism of this unusual phenomenon, we examined the structural changes induced by high hydrostatic pressures (up to 1500 MPa) using molecular dynamics simulations. By monitoring the width of the access channel, we found that the protein undergoes a conformational transition and opens the access channel at high pressures (>100 MPa). Particularly, a disordered amphiphilic α 5 region of the protein becomes ordered at high pressure. This positive correlation between the channel opening and α 5 ordering is consistent with the early findings of the gating motion in the presence of a water–oil interface. Statistical analysis of the ensemble of conformations also reveals the essential collective motions of the protein and how these motions contribute to gating. Arguments are presented as to why heightened sensitivity to high‐pressure perturbation can be a general feature of switchable interfacial proteins. Further mutations are also suggested to validate our observations. Proteins 2016; 84:820–827. © 2016 Wiley Periodicals, Inc.